View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19397_low_2 (Length: 414)
Name: NF19397_low_2
Description: NF19397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19397_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 393
Target Start/End: Original strand, 5392432 - 5392809
Alignment:
| Q |
16 |
tcaaaattgacgttctttcgattaaaattgaatattttatatttaagttcagacgtcccttgatcagacaaccacaaatattcgaaatacatgaatgtgg |
115 |
Q |
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| T |
5392432 |
tcaaaattgacgttatttcgatcaaaattggatattttatatttaagttcggacgtcccttgatcagacaaccacaaatattcgaaatacatgaatgtgg |
5392531 |
T |
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| Q |
116 |
agtgttcttatcgtaaggaatctggtggcttgatgtttcttttctcgaacaaataattcaaaagttgttgggttcttgcgtgagtagttagtaatgagtt |
215 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| |
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| T |
5392532 |
agtgttcttatcgtaaggaatctgatggcttgatgtttcttttctcgaacaaataattcaaaagttgttggattcttgtgtgagtagttagtaatgagtt |
5392631 |
T |
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| Q |
216 |
aaatatttaataaaaatgcgatatctcatctttcgctggtcttgaattattagtagattgttgcttcaagcattgctccgaactctccaaaaagttgtat |
315 |
Q |
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|||||||| ||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
5392632 |
aaatatttgataaaaatgtgatatctcatctttcgttggtcctgaattattagtagattgttgcttcaagcattgctccgaactctccaaaaaatggtat |
5392731 |
T |
|
| Q |
316 |
caaagtatggtttagtttggtagaggagcataaatgagagcggatcttggtattgaatccttgtatcaaaattcttat |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
5392732 |
caaagtatggtttagtttggtagaggagcataaatgagagcggaacttggtattgaattcttgtatcaaaattcttat |
5392809 |
T |
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