View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19397_low_3 (Length: 314)
Name: NF19397_low_3
Description: NF19397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19397_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 17 - 170
Target Start/End: Original strand, 25981538 - 25981691
Alignment:
| Q |
17 |
ttttttgtcacccatgttttcaaggaaggaaaccatggtgctgacaagcttgcaaacacatgtgtggtgggataacatctctagggagattggtttggat |
116 |
Q |
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| T |
25981538 |
ttttttgtcacccatgttttcaaggaaggaaaccattgtgctgacaagcttgcaaacacatgtgtggtgggataacatccctaggtggattggtttggat |
25981637 |
T |
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| Q |
117 |
tttgctagaaatagactaagcttaccttgttttagattttgctaacttgtgagg |
170 |
Q |
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| T |
25981638 |
tttgctataaattgactaagcttacattgttttagattttgctaacgtgtgagg |
25981691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 16 - 164
Target Start/End: Original strand, 25983716 - 25983864
Alignment:
| Q |
16 |
cttttttgtcacccatgttttcaaggaaggaaaccatggtgctgacaagcttgcaaacacatgtgtggtgggataacatctctagggagattggtttgga |
115 |
Q |
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| T |
25983716 |
cttttttgtcacccatgttttcaaggaaggaaaccatggtgctgataaggttgcaaacacatgtgtggtgggataacatccttaggtgaattggtttgga |
25983815 |
T |
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| Q |
116 |
ttttgctagaaatagactaagcttaccttgttttagattttgctaactt |
164 |
Q |
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| T |
25983816 |
ttttgctagaaatagactaagcttaccttgttttagattttgctaactt |
25983864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 19 - 170
Target Start/End: Original strand, 25982629 - 25982780
Alignment:
| Q |
19 |
ttttgtcacccatgttttcaaggaaggaaaccatggtgctgacaagcttgcaaacacatgtgtggtgggataacatctctagggagattggtttggattt |
118 |
Q |
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| T |
25982629 |
ttttgtcacccatgttttcaaggaaggaaaccatggtgctgataaggttgcaaacacatgtgtggtgggataacatccttaggcggattggtttggattt |
25982728 |
T |
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| Q |
119 |
tgctagaaatagactaagcttaccttgttttagattttgctaacttgtgagg |
170 |
Q |
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| T |
25982729 |
tgctagaaattgactaagcttacattgttttagattttgctaacgtgtgagg |
25982780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 209 - 305
Target Start/End: Original strand, 25984473 - 25984569
Alignment:
| Q |
209 |
gcacaatcctttatggaaaacaatatggttttaaattagttcaaattgacaaaaagtctagataccatcttagtgagaagtgatcgtggagaataat |
305 |
Q |
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| T |
25984473 |
gcacaatcctttatggaaaacaatatggttttaaattagttcaaattgacaaaaagtctagataccatcttagtgagaagtgatcgtggagaataat |
25984569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 17 - 70
Target Start/End: Complemental strand, 24812888 - 24812835
Alignment:
| Q |
17 |
ttttttgtcacccatgttttcaaggaaggaaaccatggtgctgacaagcttgca |
70 |
Q |
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| T |
24812888 |
ttttttgttactcatgtttttagggaaggaaaccattgtgctgacaagcttgca |
24812835 |
T |
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