View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19397_low_7 (Length: 216)
Name: NF19397_low_7
Description: NF19397
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19397_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 2462892 - 2463083
Alignment:
| Q |
11 |
ttatactacatatggttttggttatgttcctttaactggtaattataaggtcgttgctgtttttaaccatgttagcggtaacggccccaacaaagccaaa |
110 |
Q |
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| T |
2462892 |
ttatactacatatggttttggttatgttcctttaactggtaattataaggtcgttactgtttttaaccatgttagcggtaacggacccaacaaagccaaa |
2462991 |
T |
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| Q |
111 |
ttaaaggttcatactttgggtactaacaattggagaacgattgagggggatttccctgttggaggctatagttctcttatattcgtgggtag |
202 |
Q |
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| T |
2462992 |
ttaaaggttcatactttgggtactaacaattggagaacgattgagggggatttccctgttggaggctatagttctcttatattcgtgagtag |
2463083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 7398600 - 7398411
Alignment:
| Q |
11 |
ttatactacatatggttttggttatgttcctttaactggtaattataaggtcgttgctgtttttaaccatgttagcggtaacggccccaacaaagccaaa |
110 |
Q |
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| T |
7398600 |
ttatacttcatatggttttggttatgttcctttaactgataattataaggtggttgctgttttaaaccaccttagaggtaatggaccctaccatgccaga |
7398501 |
T |
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| Q |
111 |
ttaaaggttcatactttgggtactaacaattggagaacgattgagggggatttccctgttggaggctatagttctcttatattcgtgggt |
200 |
Q |
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| T |
7398500 |
ataaaggttcatactttgggtaccaactattggagaatgatcgaggggaatttccctgttgcatacgatatgtctcttaaattcgtgggt |
7398411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 148
Target Start/End: Complemental strand, 4158276 - 4158240
Alignment:
| Q |
112 |
taaaggttcatactttgggtactaacaattggagaac |
148 |
Q |
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| T |
4158276 |
taaaggttcatactttgggtactaatatttggagaac |
4158240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Original strand, 3181339 - 3181398
Alignment:
| Q |
15 |
actacatatggttttggttatgttcctttaactggtaattataaggtcgttgctgttttt |
74 |
Q |
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|||| ||||||||||||||||| |||||| | || |||||||||||| ||| |||||||| |
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| T |
3181339 |
actatatatggttttggttatgatcctttcattgataattataaggttgtttctgttttt |
3181398 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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