View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19398_high_2 (Length: 327)
Name: NF19398_high_2
Description: NF19398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19398_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 6389696 - 6389386
Alignment:
| Q |
1 |
ttcaatattatttatcaacattataatctcacaaaatagaatcaatatgcaattgaacatcaactaatcatatgtgggccagatgggccttaattgaatg |
100 |
Q |
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| T |
6389696 |
ttcaatattatttatcaacattataacctcacaaaatagaatcaatatacaattgaacatcaactaatcatatgtgggccagatgggccttaattgaatg |
6389597 |
T |
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| Q |
101 |
gtgctatgttttctnnnnnnnn-ctacacacgtgttcggaagtatactttcaaacgagnnnnnnncttcattttttgtttgtaattatgcttttcgaggg |
199 |
Q |
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| T |
6389596 |
gtgctatgttttctaaaaaaaaactacacatgtgttcggaagtatactttcaaacgagaaaaaaacttcattttttgtttgtaattatgcttttcgaggg |
6389497 |
T |
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| Q |
200 |
caaaaacaccgtttttccccggaagggtgagaaaagaaactctctaatcaagtgtgaaaggtcggtactaatcagttgcgttttcatgtcgacctataca |
299 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6389496 |
caaaaacatcgtttttccccggaagggtgagaaaagaaactctctaatcaagtgtgaaaggtcggtactaatcagttgcgttttcatgtcgacctataca |
6389397 |
T |
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| Q |
300 |
agtcaggagaa |
310 |
Q |
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| T |
6389396 |
agtcaggagaa |
6389386 |
T |
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