View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19398_low_1 (Length: 341)
Name: NF19398_low_1
Description: NF19398
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19398_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 53941548 - 53941827
Alignment:
| Q |
16 |
gttacaacacctgccacttggtgcgtcgaaaactttccgaattatgatattgctaaaactttgaatgtaaagttgacaattatgttcttcttcaaaagaa |
115 |
Q |
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| T |
53941548 |
gttacaacacctgccacttggtgtgtcgaaaactttccgaattatgatatagctaaaactttgaatgtaaagttgacaattatgttcttcttcaaaagaa |
53941647 |
T |
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| Q |
116 |
aggttggcaattatgttttctatagatatgaggttttcggaggtgaagtttcaaggtgattcacataatgtggttcatagctcccacaaccttttaaata |
215 |
Q |
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| T |
53941648 |
aggttggcaattatgttttctaaagatatgaggttttcggaggtgaagtttcaaggtgattcacataatgtggttcatagttcccacaaccttttaaata |
53941747 |
T |
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| Q |
216 |
atcaatcttactttgatatgatgtttgcgtatcccattttccc---nnnnnnnctttgagccatggaaatgtagctgctc |
292 |
Q |
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| T |
53941748 |
atcaatcttactttgatatgatgtttgcgtatcccattttcccttttttttttctttgagccatggaaatgtagctgctc |
53941827 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 235
Target Start/End: Original strand, 55446095 - 55446192
Alignment:
| Q |
138 |
tagatatgaggttttcggaggtgaagtttcaaggtgattcacataatgtggttcatagctcccacaaccttttaaataatcaatcttactttgatatg |
235 |
Q |
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|||||||| |||||| |||||| |||| ||||||| || | |||||||||| | | | |||||||||| |||||||||||||||||||| |||| |
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| T |
55446095 |
tagatatggggtttttctaggtgatgtttgaaggtgactccctaaatgtggttcgtcgttttcacaacctttcaaataatcaatcttactttggtatg |
55446192 |
T |
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