View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19399_high_1 (Length: 590)
Name: NF19399_high_1
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_1 |
 | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
| [»] scaffold1064 (2 HSPs) |
| | |
|
| [»] scaffold0019 (1 HSPs) |
| | |
|
| [»] scaffold0217 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 526; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 526; E-Value: 0
Query Start/End: Original strand, 1 - 574
Target Start/End: Complemental strand, 14234216 - 14233643
Alignment:
| Q |
1 |
agacattatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttataaactaacacttgcttgttgaacaagctaattcccta |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14234216 |
agacattatgcttgcaatttgaatctcattaagaagtgaatgtacacattacaaagcctttataaactaacacttgcttgttgaacaagctaattcccta |
14234117 |
T |
|
| Q |
101 |
actaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaattatttcttaagactcccctttaattcttaactggtgaacattga |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
14234116 |
actaactagttttgtaacaaattcttaactaactagcttaggtggcagttatgaattatttcttaacactcccctttaattcttaactgctgaacattga |
14234017 |
T |
|
| Q |
201 |
aaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacct |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
14234016 |
aaaacaccaagtttcttcctaaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgcaagttgcagctcagtgggacaatattgcacct |
14233917 |
T |
|
| Q |
301 |
caatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatgga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14233916 |
caatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatgga |
14233817 |
T |
|
| Q |
401 |
agatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgtt |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
14233816 |
agatttgttgtcaattctgagggttagaggcttcactacttcacatttaagctccttcatcactgaatctaaccacatagcttgacaagtagcaaatgtt |
14233717 |
T |
|
| Q |
501 |
cttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagc |
574 |
Q |
| |
|
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14233716 |
cttgcaatatgctcagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaagc |
14233643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 31000644 - 31000575
Alignment:
| Q |
162 |
cttaagactcccctttaattcttaactggtgaacattgaaaaacaccaagtttcttcctcaaaaattcaaa |
232 |
Q |
| |
|
||||| ||||||| ||||||| |||||| |||| || ||||||| ||||||||||||||||||||||||| |
|
|
| T |
31000644 |
cttaacactcccccttaattcataactgctgaatgtt-aaaaacatcaagtttcttcctcaaaaattcaaa |
31000575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 7 - 573
Target Start/End: Complemental strand, 9881393 - 9880816
Alignment:
| Q |
7 |
tatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttata-------aactaacacttgcttgttgaacaagctaattccct |
99 |
Q |
| |
|
||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| ||| | |
|
|
| T |
9881393 |
tatgcttacaatgtgaatctcattaagtagtgaatgtacacattacaaagccgttatataggcaaaactaacactttcttgtagaacaagctaactccat |
9881294 |
T |
|
| Q |
100 |
aactaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaattatttcttaagactcccctttaattcttaactggtgaacattg |
199 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||||| | || ||| ||||||||||||||||||||| ||||||| |||||| | || || ||||||||| |
|
|
| T |
9881293 |
aactaactagttttgtaacaaattctcaactaacttgtctacgtgacagttatgaattatttcttaacactcccccttaatt-tgaattgttgaacattg |
9881195 |
T |
|
| Q |
200 |
aaaaa-caccaagtttcttcctcaaaaattcaaatct-gtcaagtttt-actgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgc |
296 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||| |
|
|
| T |
9881194 |
aaaaaacaccaagtttcttcctcaaaaattcaaattttgtcaagtttttactgccttagtaaaaccatctgcaagttgcaactcagtgggacaatattgc |
9881095 |
T |
|
| Q |
297 |
acctcaatcattccattagtcacctgctccctaatgaaatggaatctg-gtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggctt |
395 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||| ||||||||| | ||||| |||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
9881094 |
acctcattcattccattagtcatctgctccctaataaaatggaattttagtctctatgtgcttgcttctaccatgtgagatgggattcttagcaagactt |
9880995 |
T |
|
| Q |
396 |
atggaagattt-gttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagca |
494 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| || |||||||||||||| | |
|
|
| T |
9880994 |
atggtagattttgttgtcaattatgagggttagaggcttcacaatttcacatttaagctctttcatcactgaatctaaccacaaagtttgacaagtagaa |
9880895 |
T |
|
| Q |
495 |
aatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggatatggaag |
573 |
Q |
| |
|
||||||| | |||||||| || ||||| || |||||||| |||||| | ||||||||||| || ||||||||||||||| |
|
|
| T |
9880894 |
aatgttcctacaatatactcaacttcataggatgagagtacagtaactagttgcttcttggtgtaccaggatatggaag |
9880816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 212 - 534
Target Start/End: Complemental strand, 5707059 - 5706737
Alignment:
| Q |
212 |
tttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacctcaatcattcca |
311 |
Q |
| |
|
||||||||||| |||||||||| ||||||| || ||||| || ||||| ||||| | ||| || || || ||||| || || |||| ||||||||||||| |
|
|
| T |
5707059 |
tttcttcctcacaaattcaaatttgtcaagcttcactgcatttgtaaagccatcggcaagttgtagttctgtggggcagtagtgcagctcaatcattcca |
5706960 |
T |
|
| Q |
312 |
ttagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgt |
411 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| | ||| || ||||| ||||| |||| |||| |||||||||| |||||||| |||||||||| |
|
|
| T |
5706959 |
ttagtcacttgctccctaatgaaatggaatctggtctctaagtgtttacttctgccatgagagacaggactcttagcaagacttatggatgatttgttgt |
5706860 |
T |
|
| Q |
412 |
caattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttcttgcaatata |
511 |
Q |
| |
|
|||| | || || |||||||| | ||||||||| || ||||| |||||||||||||| | || | | |||||||||||||||||||| || ||| || |
|
|
| T |
5706859 |
caatcttcagtgtcagaggctttatcacttcacacttgagctctttcatcactgaatccagccataatgcttgacaagtagcaaatgttcctgtaatgta |
5706760 |
T |
|
| Q |
512 |
cccagcttcacagaatgagagtg |
534 |
Q |
| |
|
| || |||||||| |||| |||| |
|
|
| T |
5706759 |
ctcaacttcacaggatgatagtg |
5706737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 168 - 574
Target Start/End: Complemental strand, 26905261 - 26904861
Alignment:
| Q |
168 |
actcccctttaattcttaactggtgaacattgaaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctg |
267 |
Q |
| |
|
||||||| ||||||| |||||| | || ||| || |||||||||||||||||| ||||||| |||| ||||||| || | ||||| ||||| ||| || |
|
|
| T |
26905261 |
actccccattaattcataactgctaaatatt-aacaacaccaagtttcttccttaaaaatttaaatttgtcaagcttcaaagcctttgtaaagccacatg |
26905163 |
T |
|
| Q |
268 |
taagctgcagctcagtgggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctacc |
367 |
Q |
| |
|
||||||||| || | |||||||| || | |||||||||| ||||| ||| |||||||| |||||| |||||||| ||||||||||| |||||| |||| |
|
|
| T |
26905162 |
caagctgcagttctataggacaataatgtagctcaatcatttcattattcatctgctccccaatgaagtggaatctagtctcaatgtgtttgcttatacc |
26905063 |
T |
|
| Q |
368 |
atgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaa |
467 |
Q |
| |
|
||| || ||||| ||||||||||| ||||||| |||||||||||||| | || |||||||| |||| ||| || || | ||| |||||||||||| |
|
|
| T |
26905062 |
atgagaaatagggttcttagcaagacttatggctgatttgttgtcaatcttcagtgttagaggtttca----ttcgcacttgatctctttcatcactgaa |
26904967 |
T |
|
| Q |
468 |
tctaaccgcatagtttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccaggata |
567 |
Q |
| |
|
|| |||| || | |||||| ||| ||||| | |||||||| ||| || |||||||| |||| |||||| ||| |||||||||||| | ||||| |||| |
|
|
| T |
26904966 |
tccaacc-aatggcttgacatgtatcaaatatacttgcaatttactcaacttcacaggatgaaagtgcactaacaggttgcttcttggtacaccaagata |
26904868 |
T |
|
| Q |
568 |
tggaagc |
574 |
Q |
| |
|
| ||||| |
|
|
| T |
26904867 |
tagaagc |
26904861 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 203 - 460
Target Start/End: Original strand, 9238338 - 9238596
Alignment:
| Q |
203 |
aacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacctca |
302 |
Q |
| |
|
|||||||||||| |||||||||||||||||| ||||||| || | | ||| ||||| ||||||| |||||||| | || |||||||| |||| |||| |
|
|
| T |
9238338 |
aacaccaagttttttcctcaaaaattcaaatatgtcaagcttcaaagtctttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
9238437 |
T |
|
| Q |
303 |
atcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaag |
402 |
Q |
| |
|
||||| |||||||||||||||| || ||||||| | ||||| |||||||| || |||||||||||||| ||||| |||||||| |||| ||||||| | |
|
|
| T |
9238438 |
atcataccattagtcacctgcttccaaatgaaacgaaatctagtctcaatatgtttgcttctaccatgagagatgggattcttgacaagacttatggctg |
9238537 |
T |
|
| Q |
403 |
atttgttgtcaattctgagggtt-agaggcttcaccacttcacatttaagctccttcat |
460 |
Q |
| |
|
| |||||||||||||| || ||| |||||||||| ||||||||| |||| ||| ||||| |
|
|
| T |
9238538 |
acttgttgtcaattctcagtgttaagaggcttcatcacttcacacttaatctctttcat |
9238596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 11494224 - 11494070
Alignment:
| Q |
11 |
cttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttata-------aactaacacttgcttgttgaacaagctaattccctaact |
103 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||| | |||| ||| || | |||| |
|
|
| T |
11494224 |
cttgcaatgcgaatctcattaagaagtgaatgtacacattacaaagcctatatataggcaaaactaatacttgcttgtagcacaaactatctcacaaact |
11494125 |
T |
|
| Q |
104 |
aactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaatta |
158 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11494124 |
aactagttttgtaacaaattcttaactaactagcttagctggcagttatgaatta |
11494070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 28964807 - 28964850
Alignment:
| Q |
18 |
tgtgaatctcattaagaagtgaatgtacacattacaaagccttt |
61 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||| |
|
|
| T |
28964807 |
tgtgaatctcattaagaattgaatgcacacattacaaagccttt |
28964850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 7043342 - 7043394
Alignment:
| Q |
9 |
tgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttt |
61 |
Q |
| |
|
|||||| ||| |||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
7043342 |
tgcttgtaatatgaatctcattaagttgtgaatgtacacattacatagccttt |
7043394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 200 - 565
Target Start/End: Original strand, 37786855 - 37787220
Alignment:
| Q |
200 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacc |
299 |
Q |
| |
|
||||||||| | ||| |||||||| ||||||||||||||||| || ||||| || ||||||||||| | ||| || || || ||||| || || |||| | |
|
|
| T |
37786855 |
aaaaacacctaatttattcctcaagaattcaaatctgtcaagcttcactgcttttgtaaaaccatcagcaagttgtagttctgtggggcagtagtgcagc |
37786954 |
T |
|
| Q |
300 |
tcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatgg |
399 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||| || ||||| ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
37786955 |
tcaatcattccattagtcacttgctctctaatgaaatggaatatggtctcaatgtgtttacttctgccatgtgagattggattctttgcaagacttatgg |
37787054 |
T |
|
| Q |
400 |
aagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgt |
499 |
Q |
| |
|
||||||||||||||| | || ||||||||||||| ||||||||| ||||| |||||||||||||||| | || | | |||||||||||||||||| |
|
|
| T |
37787055 |
ctgatttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagttccttcatcactgaattcagccataatgcttgacaagtagcaaatgt |
37787154 |
T |
|
| Q |
500 |
tcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccagga |
565 |
Q |
| |
|
|| |||||| ||| | |||||| | |||||||| | || ||||||||||||||| ||||| |||| |
|
|
| T |
37787155 |
tcctgcaatgtactctgcttcataagatgagagtcctgtgattggttgcttcttggtgcactagga |
37787220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 5 - 166
Target Start/End: Original strand, 26794250 - 26794418
Alignment:
| Q |
5 |
attatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttata-------aactaacacttgcttgttgaacaagctaattcc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||| |
|
|
| T |
26794250 |
attatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttatataggcaaaactaacacttgcttgtagaacaagctaactcc |
26794349 |
T |
|
| Q |
98 |
ctaactaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaattatttcttaa |
166 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||| |||||||||| || |||||||| ||||||||| |
|
|
| T |
26794350 |
ctaactaactagttttgtaacaaaatcttaactaaccagcttaggtgacaattatgaatcatttcttaa |
26794418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 203 - 387
Target Start/End: Complemental strand, 6414501 - 6414317
Alignment:
| Q |
203 |
aacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacctca |
302 |
Q |
| |
|
|||| |||||||||||||||||| || |||||| ||||| || | ||||| ||||||||||||| |||||||| || || ||||| || |||| |||| |
|
|
| T |
6414501 |
aacaacaagtttcttcctcaaaagtttaaatctatcaagcttcaaagcctttgtaaaaccatctgcaagctgcaattctgtaggacagtaatgcaactca |
6414402 |
T |
|
| Q |
303 |
atcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttag |
387 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |||||| ||| ||||||| ||||||| ||||| ||||| |||||||||| |
|
|
| T |
6414401 |
atcactccattagtcacctgctccctaatgaaatagaatctagtcccaatgtgtttgcttccgccatgagagatgggattcttag |
6414317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 3e-74; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 184 - 565
Target Start/End: Complemental strand, 296991 - 296610
Alignment:
| Q |
184 |
taactggtgaacattgaaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagt |
283 |
Q |
| |
|
|||||| |||| ||| ||||||||| | |||||||||||| ||||||||| ||||||| || |||| || ||||||||||| ||| || || || || |
|
|
| T |
296991 |
taactgctgaatattaaaaaacacctaatttcttcctcaagaattcaaatgtgtcaagcttcgctgcttttgtaaaaccatcaacaagttgtagttctgt |
296892 |
T |
|
| Q |
284 |
gggacaatattgcacctcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattc |
383 |
Q |
| |
|
||| || || |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | ||||| |||| |||||| |
|
|
| T |
296891 |
ggggcagtagtgcaactctatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgtttacttttgccatgagagacgggattc |
296792 |
T |
|
| Q |
384 |
ttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagttt |
483 |
Q |
| |
|
|||||||| ||||||| |||||||||||||| | || || |||||||||| ||||||||| || ||||| || ||||||||||| | || | | || |
|
|
| T |
296791 |
ttagcaagacttatggctgatttgttgtcaatcttcagtgtcagaggcttcatcacttcacacttgagctcttttatcactgaatccagccatagtgctt |
296692 |
T |
|
| Q |
484 |
gacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccagga |
565 |
Q |
| |
|
|| ||||||||||||||| |||||| ||| |||||||| || |||||||||| || ||||||||||||||| |||||||||| |
|
|
| T |
296691 |
gaaaagtagcaaatgttcctgcaatgtactcagcttcataggatgagagtgcggtgattggttgcttcttggtgcaccagga |
296610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 200 - 538
Target Start/End: Complemental strand, 30380553 - 30380216
Alignment:
| Q |
200 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacc |
299 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||| ||||||| || ||||| || ||||| |||| || ||| ||||| || || | | | || || | | |
|
|
| T |
30380553 |
aaaaacaccaagttttttcctcaaaaattaaaatatgtcaagcttcactgcttttgtaaa-ccatatgcaagttgcagttctgttgtatagtagtgtagc |
30380455 |
T |
|
| Q |
300 |
tcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatgg |
399 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||| | ||||||||||| ||||||| |||||| ||||||| |
|
|
| T |
30380454 |
tcaatcattccattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttacttttgccatgtgagattggattctaagcaagacttatgg |
30380355 |
T |
|
| Q |
400 |
aagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgt |
499 |
Q |
| |
|
|||||||||||||| || |||||||| |||| ||||||||| || ||||| |||||||||||||| || | | || ||||||||||||||| || |
|
|
| T |
30380354 |
ctgatttgttgtcaatctccagtgttagaggtttcatcacttcacacttgagctctttcatcactgaatccaatcatagagcttgacaagtagcaaaagt |
30380255 |
T |
|
| Q |
500 |
tcttgcaatatacccagcttcacagaatgagagtgcagt |
538 |
Q |
| |
|
|| | |||| || || ||||||| ||| ||||||||| |
|
|
| T |
30380254 |
tccttcaatgtattcaacttcacatgatgcgagtgcagt |
30380216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 200 - 390
Target Start/End: Complemental strand, 35898511 - 35898321
Alignment:
| Q |
200 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacc |
299 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||| || |||||||| |||| |||| | ||| ||||| || |||| ||||| |||| | |
|
|
| T |
35898511 |
aaaaacaccaagttccttcctcaagaattcaaatctgtcaaacttcactgcctttttaaagccataagcaagttgcagttccgtggagcaatagtgcagc |
35898412 |
T |
|
| Q |
300 |
tcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaa |
390 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || || |||||||| || |||||||| |||| |
|
|
| T |
35898411 |
tcaatcattccattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttactcctgccatgtgatattggattctttgcaa |
35898321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 64 - 166
Target Start/End: Complemental strand, 8265916 - 8265814
Alignment:
| Q |
64 |
aaactaacacttgcttgttgaacaagctaattccctaactaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaattatttct |
163 |
Q |
| |
|
|||||||||||| ||||| ||||||||||| | ||||||||||||||||| ||| ||| ||| |||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
8265916 |
aaactaacactttcttgtagaacaagctaacttcctaactaactagttttctaacaaaatctcaactaacttgcttaggtggcagttatgaattaattct |
8265817 |
T |
|
| Q |
164 |
taa |
166 |
Q |
| |
|
||| |
|
|
| T |
8265816 |
taa |
8265814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 123; Significance: 7e-63; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 200 - 562
Target Start/End: Complemental strand, 302240 - 301878
Alignment:
| Q |
200 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacc |
299 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||||||||||| || | ||| || ||||||||||| | ||| || || | ||||| || || |||| | |
|
|
| T |
302240 |
aaaaacacctaatttcttcctcaagaattcaaatctgtcaagcttcattgcttttgtaaaaccatcagcaagttgtagttttgtggggcagtagtgcagc |
302141 |
T |
|
| Q |
300 |
tcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatgg |
399 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| |||||||||||||||||| || || || ||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
302140 |
tcaatcattccattagtcacctgctctcaaatgaaattgaatctggtctcaatgtgtttactcctgccatgtgagattagattctttgcaagacttgtgg |
302041 |
T |
|
| Q |
400 |
aagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgt |
499 |
Q |
| |
|
||||||||||||||| | || ||||||||||||| ||||||||| ||||| |||||||||||||||| | || | | |||||||||||||||||| |
|
|
| T |
302040 |
ctgatttgttgtcaattttcagtgttagaggcttcatcacttcacacttaagttccttcatcactgaattcagccataatgcttgacaagtagcaaatgt |
301941 |
T |
|
| Q |
500 |
tcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcacca |
562 |
Q |
| |
|
|| |||||| ||| | || || | ||||||||||| | | ||||||||||||| ||||||| |
|
|
| T |
301940 |
tcctgcaatgtactctgcaccattggatgagagtgcattgactggttgcttcttggtgcacca |
301878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 200 - 562
Target Start/End: Complemental strand, 3461687 - 3461325
Alignment:
| Q |
200 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacc |
299 |
Q |
| |
|
|||||||||||||| ||| ||||| ||||||||| ||||||| ||||||||||| ||||||||||| | ||| ||||| || ||||| ||||| |||| | |
|
|
| T |
3461687 |
aaaaacaccaagttcctttctcaagaattcaaatatgtcaagctttactgcctttgtaaaaccatcagcaagttgcagttctgtggggcaatagtgcagc |
3461588 |
T |
|
| Q |
300 |
tcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatgg |
399 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||||||| ||||||||||||| || || || |||||| |||| |||||||| |||| ||||||| |
|
|
| T |
3461587 |
tcaatcattccattagtcacatgctctctaataaaatggaatatggtctcaatgtgtttactcctgccatgtaagattggattctttacaagacttatgg |
3461488 |
T |
|
| Q |
400 |
aagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgt |
499 |
Q |
| |
|
||||| || |||||| | || ||||||||||||| ||||||||| |||| ||||||||||||||||| |||| | | ||||||||||||||| || |
|
|
| T |
3461487 |
ctgatttattatcaattttcagtgttagaggcttcatcacttcacacttaaattccttcatcactgaatccaaccatagtgcttgacaagtagcaaaagt |
3461388 |
T |
|
| Q |
500 |
tcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcacca |
562 |
Q |
| |
|
| | || ||| | ||||||| ||||||||||||| | |||||||||||| ||||||| |
|
|
| T |
3461387 |
accagttatgtactcttcttcacatgatgagagtgcagtgactggttgcttctttgtgcacca |
3461325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 203 - 534
Target Start/End: Original strand, 38099394 - 38099725
Alignment:
| Q |
203 |
aacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacctca |
302 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| || | ||||| ||||| |||| || |||| || || || ||||||||||| | ||| |
|
|
| T |
38099394 |
aacaccaagtttcttcctcaaaaattcaaatatgccaagcttcaaagcctttgtaaagccatatgctagctacaattctgtaggacaatattgtagttca |
38099493 |
T |
|
| Q |
303 |
atcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaag |
402 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||||| ||||||||||| ||| |||||||||| || ||||||||| ||||||| ||||||| | |
|
|
| T |
38099494 |
atcataccattagtcactcgctccctaatgaaatggaatctagtctcaatgtgtttgattctaccatgagaaataggattcctagcaagacttatggttg |
38099593 |
T |
|
| Q |
403 |
atttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttct |
502 |
Q |
| |
|
||||||||||||| | || |||||||| |||| ||||||||| || ||||| ||||||| |||||| | | || || |||||| | ||||||| | |
|
|
| T |
38099594 |
atttgttgtcaatcttcagtgttagaggtttcatcacttcacacttgagctctttcatcattgaatccagcaacagagcttgacatattgcaaatgcacc |
38099693 |
T |
|
| Q |
503 |
tgcaatatacccagcttcacagaatgagagtg |
534 |
Q |
| |
|
|||||| ||| || ||||||| |||||||||| |
|
|
| T |
38099694 |
tgcaatgtactcaacttcacataatgagagtg |
38099725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 5 - 166
Target Start/End: Complemental strand, 6962235 - 6962074
Alignment:
| Q |
5 |
attatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttata-------aactaacacttgcttgttgaacaagctaattcc |
97 |
Q |
| |
|
||||||||||||||||||||||||||| || |||||||||||||||||||||||| || |||||||||||||| ||||||| | | | | |
|
|
| T |
6962235 |
attatgcttgcaatgtgaatctcatta----gt---tgtacacattacaaagcctttatataggcaaaattaacacttgcttgtagaacaagatgacttc |
6962143 |
T |
|
| Q |
98 |
ctaactaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaattatttcttaa |
166 |
Q |
| |
|
|||||||||||||||||||| ||| | | ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6962142 |
ctaactaactagttttgtaacaaaatttcaactaactaacttaggtggcagttatgaattatttcttaa |
6962074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 200 - 318
Target Start/End: Original strand, 39190879 - 39190997
Alignment:
| Q |
200 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacc |
299 |
Q |
| |
|
||||||||| | |||||||||||| ||||||||||||||||| || ||||| || | ||||||||| | ||| ||||| || ||||| || || |||| | |
|
|
| T |
39190879 |
aaaaacacctaatttcttcctcaagaattcaaatctgtcaagcttcactgcttttgcaaaaccatcagcaagttgcagttctgtggggcagtagtgcagc |
39190978 |
T |
|
| Q |
300 |
tcaatcattccattagtca |
318 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
39190979 |
tcaatcattccattagtca |
39190997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 40498109 - 40498053
Alignment:
| Q |
5 |
attatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttt |
61 |
Q |
| |
|
|||||| |||||||||||||||||||||||| | || | |||| |||||||||||| |
|
|
| T |
40498109 |
attatgtttgcaatgtgaatctcattaagaattaaagttgcacaatacaaagccttt |
40498053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 121; Significance: 1e-61; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 200 - 440
Target Start/End: Original strand, 50778358 - 50778598
Alignment:
| Q |
200 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacc |
299 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| ||||||||||| ||||| ||||| | ||| ||||| || ||||| ||||| |||| | |
|
|
| T |
50778358 |
aaaaacaccaagttccttcctaaaaaattcaaatctgtcaagctttactgcctttgtaaagccatcagcaagttgcagttctgtggggcaatagtgcagc |
50778457 |
T |
|
| Q |
300 |
tcaatcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatgg |
399 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| || || || ||||||||||| |||||||| ||||| ||||||| |
|
|
| T |
50778458 |
tcaatcattcaattagtcacctgctctctaatgaaatggaatctggtctcaatgtgtttactcctgccatgtgagattggattctttgcaagacttatgg |
50778557 |
T |
|
| Q |
400 |
aagatttgttgtcaattctgagggttagaggcttcaccact |
440 |
Q |
| |
|
||||| || |||||| | || ||||||||||||| |||| |
|
|
| T |
50778558 |
ctgatttattatcaattttcagtgttagaggcttcatcact |
50778598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 5 - 163
Target Start/End: Original strand, 25590727 - 25590894
Alignment:
| Q |
5 |
attatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttat-------aaactaacacttgcttgttgaacaagctaattcc |
97 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| | || ||| || |
|
|
| T |
25590727 |
attatgcttgcaatgtgaatctcattaagaagtgaatgtacacgttacaaagcctttatataagcaaaactaacacttgcttgtaacataacctatctca |
25590826 |
T |
|
| Q |
98 |
ctaactaactag-ttttgtaaaaaattcttaactaactagctt-aggtggcagttatgaattatttct |
163 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
25590827 |
ctaactaactagtttttttaacaaattcttaactaactaggttaaggtggcagttatgaattatttct |
25590894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 482 - 565
Target Start/End: Original strand, 44536445 - 44536528
Alignment:
| Q |
482 |
ttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcaccagga |
565 |
Q |
| |
|
||||||||||||||||||| |||||| ||| | | || || | ||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
44536445 |
ttgacaagtagcaaatgtttctgcaatgtactctggtttactggatgagagcgcagtgattggttgcttcttggtgcaccagga |
44536528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 61
Target Start/End: Complemental strand, 51119573 - 51119534
Alignment:
| Q |
22 |
aatctcattaagaagtgaatgtacacattacaaagccttt |
61 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
51119573 |
aatctcattaagaattaaatgtacacattacaaagccttt |
51119534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 115; Significance: 4e-58; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 212 - 534
Target Start/End: Original strand, 18641214 - 18641536
Alignment:
| Q |
212 |
tttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacctcaatcattcca |
311 |
Q |
| |
|
||||||||||| |||||||||| ||||||| || ||||| || ||||| ||||| | ||| || || || ||||| || || |||| ||||||||||||| |
|
|
| T |
18641214 |
tttcttcctcacaaattcaaatttgtcaagcttcactgcatttgtaaagccatcggcaagttgtagttctgtggggcagtagtgcagctcaatcattcca |
18641313 |
T |
|
| Q |
312 |
ttagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgt |
411 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| | ||| || ||||| ||||| |||| |||| |||||||||| |||||||| |||||||||| |
|
|
| T |
18641314 |
ttagtcacttgctccctaatgaaatggaatctggtctctaagtgtttacttctgccatgagagacaggactcttagcaagacttatggatgatttgttgt |
18641413 |
T |
|
| Q |
412 |
caattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttcttgcaatata |
511 |
Q |
| |
|
|||| | || || |||||||| | ||||||||| || ||||| |||||||||||||| | || | | |||||||||||||||||||| || ||| || |
|
|
| T |
18641414 |
caatcttcagtgtcagaggctttatcacttcacacttgagctctttcatcactgaatccagccataatgcttgacaagtagcaaatgttcctgtaatgta |
18641513 |
T |
|
| Q |
512 |
cccagcttcacagaatgagagtg |
534 |
Q |
| |
|
| || |||||||| |||| |||| |
|
|
| T |
18641514 |
ctcaacttcacaggatgatagtg |
18641536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 5 - 158
Target Start/End: Complemental strand, 51810671 - 51810511
Alignment:
| Q |
5 |
attatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcctttata-------aactaacacttgcttgttgaacaagctaattcc |
97 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| || ||||||||||||||||||| |||||||| |||||||| | |||||||| || |
|
|
| T |
51810671 |
attatgcttgcaatgtgaatctcaatgagaagtgaatttatacattacaaagcctttatataggcaaaactaacatttgcttgtagcacaagctatctca |
51810572 |
T |
|
| Q |
98 |
ctaactaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaatta |
158 |
Q |
| |
|
|| | ||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
51810571 |
ctgattaactagttttgtaaccaattcttaactaactagcttaggtggcagtcatgaatta |
51810511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 423 - 554
Target Start/End: Complemental strand, 34983027 - 34982898
Alignment:
| Q |
423 |
gttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttcttgcaatatacccagcttcac |
522 |
Q |
| |
|
||||||||||||||||||||||| || ||||| |||||| || | || |||| | | |||||||||||||||||||| |||||||||| || |||||| |
|
|
| T |
34983027 |
gttagaggcttcaccacttcacacttgagctctttcatcgctaattccaaccataaaacttgacaagtagcaaatgttcatgcaatatactcaacttcac |
34982928 |
T |
|
| Q |
523 |
agaatgagagtgcagtaattggttgcttcttg |
554 |
Q |
| |
|
|| || ||||||||| | | ||||||||||| |
|
|
| T |
34982927 |
aggat--gagtgcagtgactagttgcttcttg |
34982898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 98 - 254
Target Start/End: Complemental strand, 1663318 - 1663164
Alignment:
| Q |
98 |
ctaactaactagttttgtaa-aaaattcttaactaactagcttaggtggcagttatgaattatttcttaagactcccctttaattcttaactggtgaaca |
196 |
Q |
| |
|
|||||||| |||||||||| |||||||| |||||||| ||| | ||||||||||| |||| |||||| ||| || ||||||| |||||| |||| |
|
|
| T |
1663318 |
ctaactaagaagttttgtaacaaaattct-aactaacttgct-acatggcagttatggattaaatcttaacgctcgcccttaattcataactgctgaatg |
1663221 |
T |
|
| Q |
197 |
ttgaaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgcctta |
254 |
Q |
| |
|
|||| ||||||||||||||||||| ||||| |||||||| |||| ||||| ||||||| |
|
|
| T |
1663220 |
ttgagaaacaccaagtttcttcct-aaaaactcaaatctatcaaattttaatgcctta |
1663164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 1663412 - 1663369
Alignment:
| Q |
18 |
tgtgaatctcattaagaagtgaatgtacacattacaaagccttt |
61 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
1663412 |
tgtgaatctcattaagaattgaatgtacaccttacaaagacttt |
1663369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 203 - 562
Target Start/End: Complemental strand, 49221 - 48862
Alignment:
| Q |
203 |
aacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacctca |
302 |
Q |
| |
|
|||||| | |||||||||||| ||||||||| ||||||| || ||||| || ||||||||||| | ||| || || || ||||| || || |||| |||| |
|
|
| T |
49221 |
aacacctaatttcttcctcaagaattcaaatttgtcaagcttcactgcttttgtaaaaccatcagcaagttgtagttctgtggggcagtagtgcaactca |
49122 |
T |
|
| Q |
303 |
atcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaag |
402 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||| |||||| || ||||| ||||| |||| | |||||||||||| |||||| | |
|
|
| T |
49121 |
atcattccattagtcacatgctctctaatgaaatggaatctggtcgaaatgtgtttacttctgccatgagagacaatattcttagcaagacttatgcctg |
49022 |
T |
|
| Q |
403 |
atttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttct |
502 |
Q |
| |
|
||||||||||||| | || || |||||||| ||||||||||| || ||||| ||||||||| |||| | || | ||||| ||||||||||| |||| |
|
|
| T |
49021 |
atttgttgtcaatcttcagtgtcagaggctttaccacttcacacttgagctctttcatcactaaatccagccataatgtttggcaagtagcaaaagttcc |
48922 |
T |
|
| Q |
503 |
tgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcacca |
562 |
Q |
| |
|
|| || ||| | ||||||||| |||| |||||||| | ||||||||||||| ||||||| |
|
|
| T |
48921 |
agctatgtactctgcttcacaggatgaaagtgcagtgactggttgcttcttggtgcacca |
48862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 203 - 562
Target Start/End: Complemental strand, 28249059 - 28248700
Alignment:
| Q |
203 |
aacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacctca |
302 |
Q |
| |
|
|||||| | |||||||||||| ||||||||| ||||||| || ||||| || ||||||||||| | ||| || || || ||||| || || |||| |||| |
|
|
| T |
28249059 |
aacacctaatttcttcctcaagaattcaaatttgtcaagcttcactgcttttgtaaaaccatcagcaagttgtagttctgtggggcagtagtgcaactca |
28248960 |
T |
|
| Q |
303 |
atcattccattagtcacctgctccctaatgaaatggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagcaaggcttatggaag |
402 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||||||||||| |||||| || ||||| ||||| |||| | |||||||||||| |||||| | |
|
|
| T |
28248959 |
atcattccattagtcacatgctctctaatgaaatggaatctggtcgaaatgtgtttacttctgccatgagagacaatattcttagcaagacttatgcctg |
28248860 |
T |
|
| Q |
403 |
atttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttct |
502 |
Q |
| |
|
||||||||||||| | || || |||||||| ||||||||||| || ||||| ||||||||| |||| | || | ||||| ||||||||||| |||| |
|
|
| T |
28248859 |
atttgttgtcaatcttcagtgtcagaggctttaccacttcacacttgagctctttcatcactaaatccagccataatgtttggcaagtagcaaaagttcc |
28248760 |
T |
|
| Q |
503 |
tgcaatatacccagcttcacagaatgagagtgcagtaattggttgcttcttgatgcacca |
562 |
Q |
| |
|
|| || ||| | ||||||||| |||| |||||||| | ||||||||||||| ||||||| |
|
|
| T |
28248759 |
agctatgtactctgcttcacaggatgaaagtgcagtgactggttgcttcttggtgcacca |
28248700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 8 - 314
Target Start/End: Original strand, 29010823 - 29011122
Alignment:
| Q |
8 |
atgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagcc-tttataaactaaca-----cttgcttgttgaacaagctaattccctaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | || | ||||||||| | |||||||| || |||| |
|
|
| T |
29010823 |
atgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttttataggcaaatatgatgcttgcttgtagcacaagctatctcactaa |
29010922 |
T |
|
| Q |
102 |
ctaactagttttgtaaaaaattcttaactaactagcttaggtggcagttatgaattatttcttaagactcccctttaattcttaactggtgaacattgaa |
201 |
Q |
| |
|
||||| ||| || ||||||||| || || ||||||||||| |||| |||||| ||||| ||||||| |||||| |||| | || | |
|
|
| T |
29010923 |
ctaac-----------aaattttctaactaacttgc-taaatggcagttatggattaaatcttaatactccatcttaattcataactgttgaatactg-a |
29011009 |
T |
|
| Q |
202 |
aaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacctc |
301 |
Q |
| |
|
||||||||||||||||||| ||||| | |||| |||||||||| | || ||||||||||||| || ||| ||||| || || |||||| | |||| ||| |
|
|
| T |
29011010 |
aaacaccaagtttcttcctaaaaaacttaaatttgtcaagtttcaaagctttagtaaaaccatatgcaagttgcagttctgtaggacaaaactgcagctc |
29011109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 433 - 568
Target Start/End: Original strand, 29011192 - 29011330
Alignment:
| Q |
433 |
tcaccacttcacatttaagctccttcatcactgaatctaaccgcatagtttgacaagtagcaaatgttcttgcaatatacccagcttcacagaatgagag |
532 |
Q |
| |
|
|||| |||||||| || || || |||||||||||||| |||| || || |||||| ||||||||| ||| |||||||||| |||||||||| ||||||| |
|
|
| T |
29011192 |
tcacaacttcacacttgagttcattcatcactgaatccaaccacaaagcttgacatgtagcaaatattcctgcaatatactcagcttcacaagatgagag |
29011291 |
T |
|
| Q |
533 |
tgcagtaatt---ggttgcttcttgatgcaccaggatat |
568 |
Q |
| |
|
|||||||| | ||||||||||| ||||||| ||||| |
|
|
| T |
29011292 |
tgcagtaagtacatgttgcttcttggtgcaccaagatat |
29011330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 11187017 - 11187090
Alignment:
| Q |
200 |
aaaaacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagct |
273 |
Q |
| |
|
||||| ||| |||||||||||||||||||||||| || |||||| ||||| || ||||||||||||| ||||| |
|
|
| T |
11187017 |
aaaaatacctagtttcttcctcaaaaattcaaatacgtgaagtttcactgcttttgtaaaaccatctgcaagct |
11187090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 357 - 508
Target Start/End: Original strand, 2420 - 2571
Alignment:
| Q |
357 |
ttgcttctaccatgtgagataggattcttagcaaggcttatggaagatttgttgtcaattctgagggttagaggcttcaccacttcacatttaagctcct |
456 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||||||| || |||||||||||||| | ||||||||||||| ||||||||| |||||||| | |
|
|
| T |
2420 |
ttgcttctaccatgagagatgggattcttgacaaggcttatggctgacttgttgtcaattctcaatgttagaggcttcatcacttcacacttaagctctt |
2519 |
T |
|
| Q |
457 |
tcatcactgaatctaaccgcatagtttgacaagtagcaaatgttcttgcaat |
508 |
Q |
| |
|
|||| ||||||| |||| || || |||||| ||||||||||| | |||||| |
|
|
| T |
2520 |
tcattgctgaatccaaccacaaagcttgacatgtagcaaatgtacctgcaat |
2571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 203 - 307
Target Start/End: Original strand, 2313 - 2417
Alignment:
| Q |
203 |
aacaccaagtttcttcctcaaaaattcaaatctgtcaagttttactgccttagtaaaaccatctgtaagctgcagctcagtgggacaatattgcacctca |
302 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| | ||||| || | | ||| ||||| ||||||| |||||||| | || |||||||| |||| |||| |
|
|
| T |
2313 |
aacaccaagttttttcctcaaaaattaaaatatttcaagcttcaaagtctttgtaaagccatctgcaagctgcaattatgtaggacaatactgcaactca |
2412 |
T |
|
| Q |
303 |
atcat |
307 |
Q |
| |
|
||||| |
|
|
| T |
2413 |
atcat |
2417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 5 - 61
Target Start/End: Original strand, 59472 - 59528
Alignment:
| Q |
5 |
attatgcttgcaatgtgaatctcattaagaagtgaatgtacacattacaaagccttt |
61 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| | |||| |||||||||||| |
|
|
| T |
59472 |
attatgcttgcaatgtgaatctcattaagacttgaagttgcacaatacaaagccttt |
59528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0217 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0217
Description:
Target: scaffold0217; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 336 - 388
Target Start/End: Complemental strand, 2896 - 2844
Alignment:
| Q |
336 |
tggaatctggtctcaatgtgcttgcttctaccatgtgagataggattcttagc |
388 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||| |||||||| ||||| |
|
|
| T |
2896 |
tggaatctagtctcaatgtgtttgcttttaccatgtgcaataggatttttagc |
2844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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