View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_11 (Length: 495)
Name: NF19399_high_11
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_11 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 34654785 - 34654936
Alignment:
| Q |
23 |
agctgcgccgaggaaaagaataaaagactgagttgactctttcatgc--gctccaacttggctcaggggaatatcacttagttggtagagctccactctt |
120 |
Q |
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| T |
34654785 |
agctgcgccaaggaaaagaataaaagactgatttgactccttcatgcatgctccaacttggctcggggga-tatagctcagttggtagagctccactctt |
34654883 |
T |
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| Q |
121 |
gcaattgagtcgttgtgattacggtttggatgtctaattgtctaagcggtaat |
173 |
Q |
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| T |
34654884 |
gcaattgggtcgttgcgattacgggttggatgtctaattatccaggcggtaat |
34654936 |
T |
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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 100 - 144
Target Start/End: Original strand, 7515259 - 7515303
Alignment:
| Q |
100 |
agttggtagagctccactcttgcaattgagtcgttgtgattacgg |
144 |
Q |
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| T |
7515259 |
agttggtagagctccactattgcaattgggtcgttgcgattacgg |
7515303 |
T |
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Target: chr4 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 23 - 173
Target Start/End: Original strand, 491457 - 491610
Alignment:
| Q |
23 |
agctgcgccgaggaaaagaataaaagactgagttgactctttcatgc--gctccaacttggctcagggga-atatcacttagttggtagagctccactct |
119 |
Q |
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| T |
491457 |
agctgcgccaaggaaaagaataaaagactgatttgactccttcatgcatgctccaacttggctcgggggggatatagctcagttggtagagctccgctct |
491556 |
T |
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| Q |
120 |
tgcaattgagtcgttgtgattacggtttggatgtctaattgtctaagcggtaat |
173 |
Q |
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| T |
491557 |
tgcaattgggtcgttgcgattacgggttggatgtctaattgtccaggcggtaat |
491610 |
T |
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Target: chr3 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 23 - 173
Target Start/End: Complemental strand, 13222718 - 13222565
Alignment:
| Q |
23 |
agctgcgccgaggaaaagaataaaagactgagttgactctttcatgc--gctccaacttggctcagggga-atatcacttagttggtagagctccactct |
119 |
Q |
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| T |
13222718 |
agctgcgccaaggaaaagaataaaagactgatttgactccttcatgcatgctccaacttggctcgggggggatatagctcagttggtagagctccgctct |
13222619 |
T |
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| Q |
120 |
tgcaattgagtcgttgtgattacggtttggatgtctaattgtctaagcggtaat |
173 |
Q |
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| T |
13222618 |
tgcaattgggtcgttgcgattacgggttggatgtctaattgtccaggcggtaat |
13222565 |
T |
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Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 410 - 485
Target Start/End: Complemental strand, 33711603 - 33711528
Alignment:
| Q |
410 |
aaaggaaaattggcatttttctactgtttcctacatattatgtttcttactgtaaaattattctttgtttgatatt |
485 |
Q |
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| T |
33711603 |
aaaggaaaattggcatttttctactgtttcctacatattatgtttcttactgtaaaattattctttgtttgatatt |
33711528 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 258 - 319
Target Start/End: Complemental strand, 33716130 - 33716069
Alignment:
| Q |
258 |
atctatagcaaaaataagaggttatagtgataatcttgtgatcatagtcaattactttcatt |
319 |
Q |
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| T |
33716130 |
atctatatcaataatcagaggctatagtgatagttttgtgagcatagtcaattactttcatt |
33716069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 230 - 302
Target Start/End: Complemental strand, 21219585 - 21219513
Alignment:
| Q |
230 |
caaaacatacacttccgtttctaggctaatctatagcaaaaataagaggttatagtgataatcttgtgatcat |
302 |
Q |
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| T |
21219585 |
caaagcatacattttcatttctaggctaatctatagcaataattagaggatatattgagacttttgtgatcat |
21219513 |
T |
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Target: chr1 (Bit Score: 71; Significance: 6e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 23 - 162
Target Start/End: Original strand, 3856536 - 3856677
Alignment:
| Q |
23 |
agctgcgccgaggaaaagaataaaagactgagttgactctttcatgcg--ctccaacttggctcaggggaatatcacttagttggtagagctccactctt |
120 |
Q |
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| T |
3856536 |
agctgtgccaaggaaaagaataaaagactgatttgactccatcatgcgtgctccaacttgactcggggggatataacttagttggtagagctccgctctt |
3856635 |
T |
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| Q |
121 |
gcaattgagtcgttgtgattacggtttggatgtctaattgtc |
162 |
Q |
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| T |
3856636 |
gcaattgggtcgttgcgattacaggttggatgtctaactgtc |
3856677 |
T |
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Target: scaffold0002 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 185974 - 185898
Alignment:
| Q |
100 |
agttggtagagctccactcttgcaattgagtcgttgtgattacggtttggatgtctaattgtctaagcggtaataat |
176 |
Q |
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| T |
185974 |
agttggtagagctccgctcttgcaattgggtcgttgcgattacgggttggatgtctaattgtcaaggcggtaataat |
185898 |
T |
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