View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_12 (Length: 481)
Name: NF19399_high_12
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Complemental strand, 2391592 - 2391154
Alignment:
| Q |
19 |
gaaatgaaaggtccaaaatctaccaagtcttcctccatttaaagctttattaaggtttgaagtatattagactcatttgtctaacttttaaccgtttgaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391592 |
gaaatgaaaggtccaaaatctaccaagtcttcctccatttaaagctttattaaggtttgaagtatattagactcatttgtctaacttttaaccgtttgaa |
2391493 |
T |
|
| Q |
119 |
gggtttgaaagaacatataactctgaattgccaactgggtcgtttattctggtattgcttgcttgctgagtcacatgttcatattannnnnnngaccaaa |
218 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2391492 |
---------agaacatataactctgaattgtcaactgggtcgtttattctggtattgcttgcttgctgagtcacatgttcatattatttttttgaccaaa |
2391402 |
T |
|
| Q |
219 |
gtaacaattttcatattaaattccacat-----gttgaaagtccaaaccattcaattcaaatttaacacataccataaatcctttgccgcttagt-attg |
312 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
2391401 |
gtaacaattttcatattaaattccacaatatgcgttgaaagtccaaaccattcaattcaaatttaacgcataccataaatcctttgccgcttagttattg |
2391302 |
T |
|
| Q |
313 |
atcacatattttctttgtctaagtattaagtttatgataccttcattatcatgtgactttttcttcaaaatccgtccacattaaaattaaaaagacatgc |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391301 |
atcacatattttctttgtctaagtattaagtttatgatatcttcattattatgtgactgtttcttcaaaatccgtccacattaaaattaaaaagacatgc |
2391202 |
T |
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| Q |
413 |
ttacctcaaatacaaaaaatcgacaagacaccattttatcctcaatat |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2391201 |
ttacctcaaatacaaaaaatcgacaagacaccattttatcctcaatat |
2391154 |
T |
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