View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19399_high_16 (Length: 451)

Name: NF19399_high_16
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19399_high_16
NF19399_high_16
[»] chr2 (3 HSPs)
chr2 (183-436)||(1905342-1905594)
chr2 (12-152)||(1905200-1905343)
chr2 (17-89)||(13080193-13080265)
[»] chr3 (4 HSPs)
chr3 (15-91)||(41235442-41235518)
chr3 (17-88)||(44554359-44554430)
chr3 (19-88)||(47086169-47086238)
chr3 (20-88)||(47085611-47085679)
[»] chr8 (4 HSPs)
chr8 (17-98)||(39739566-39739647)
chr8 (17-89)||(32612103-32612175)
chr8 (17-88)||(39742397-39742468)
chr8 (17-88)||(37695390-37695461)
[»] chr7 (1 HSPs)
chr7 (15-88)||(39796614-39796687)
[»] chr4 (4 HSPs)
chr4 (15-88)||(49321629-49321702)
chr4 (17-88)||(37198059-37198130)
chr4 (17-88)||(50344360-50344431)
chr4 (15-88)||(50344518-50344591)
[»] chr1 (1 HSPs)
chr1 (17-88)||(27520611-27520682)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 183 - 436
Target Start/End: Original strand, 1905342 - 1905594
Alignment:
Q  183 tccgcattgcattttgattctgttattttaatgataggtagatttgattgccacctggaagaagaagaagaaaaagatgattgatgat----gaaggctt 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||    
T  1905342 tccgcattgcattttgattctgttattttaatgataggtagatttgattgccacctggaagaagaagaagaaaaagatgattgatgatgaaggaaggctt 1905441  T
Q  279 gggattcattgccaaactatcttggcatggcatcttcatttttgcgttggttgtcgcatatcacttggtcatagctgaccccaaatatgaagccaataat 378  Q
    ||||||||| ||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1905442 gggattcatggccaaactatct-----tggcatcttcatttttgcgttggttgtcgcatatcacttggtcatagctgaccccaaatatgaagccaataat 1905536  T
Q  379 tagatactatgnnnnnnnggtagtaaaggtactagatggctcattcccccaatcaaag 436  Q
    |||||||||||       ||||||||||||||||||||||||||||||||||||||||    
T  1905537 tagatactatgaaaaaaaggtagtaaaggtactagatggctcattcccccaatcaaag 1905594  T

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Target: chr2; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 12 - 152
Target Start/End: Original strand, 1905200 - 1905343
Alignment:
Q  12 atgaagtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagc--cacacttctc-tttttacctttttt 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| ||||||||||||||    
T  1905200 atgaagtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccacacacttctcttttttacctttttt 1905299  T
Q  109 attcatcgcttgttatattcagttatgattagtattattgtttc 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1905300 attcatcgcttgttatattcagttatgattagtattattgtttc 1905343  T

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Target: chr2; HSP #3
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 13080265 - 13080193
Alignment:
Q  17 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccacac 89  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13080265 gtggctgtagtttagtggtgagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccacac 13080193  T

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Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 15 - 91
Target Start/End: Complemental strand, 41235518 - 41235442
Alignment:
Q  15 aagtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccacactt 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41235518 aagtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccacactt 41235442  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 44554430 - 44554359
Alignment:
Q  17 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44554430 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 44554359  T

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Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 47086238 - 47086169
Alignment:
Q  19 ggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 88  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||    
T  47086238 ggctgtagtttagtggtaagaattccacgttgtggctgtggagacctgggcttgaatcccagcacccaca 47086169  T

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Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 47085679 - 47085611
Alignment:
Q  20 gctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 88  Q
    ||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||| ||||||||||    
T  47085679 gctgtagtttagtggtaagaattccacattgtggcccaggagacctgggctcgaatccaagcagccaca 47085611  T

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Target: chr8 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 39739647 - 39739566
Alignment:
Q  17 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccacacttctctttt 98  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  39739647 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccacaattctttttt 39739566  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 32612175 - 32612103
Alignment:
Q  17 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccacac 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32612175 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccacac 32612103  T

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Target: chr8; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 39742468 - 39742397
Alignment:
Q  17 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39742468 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 39742397  T

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Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 37695461 - 37695390
Alignment:
Q  17 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 88  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37695461 gtggctgtagtttagtggttagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 37695390  T

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Target: chr7 (Bit Score: 74; Significance: 9e-34; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 39796687 - 39796614
Alignment:
Q  15 aagtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39796687 aagtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 39796614  T

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Target: chr4 (Bit Score: 74; Significance: 9e-34; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 15 - 88
Target Start/End: Original strand, 49321629 - 49321702
Alignment:
Q  15 aagtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49321629 aagtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 49321702  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 37198130 - 37198059
Alignment:
Q  17 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37198130 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 37198059  T

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Target: chr4; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 50344431 - 50344360
Alignment:
Q  17 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50344431 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 50344360  T

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Target: chr4; HSP #4
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 50344591 - 50344518
Alignment:
Q  15 aagtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 88  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50344591 aagtggctgtagtttagtggtgagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 50344518  T

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Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 27520611 - 27520682
Alignment:
Q  17 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27520611 gtggctgtagtttagtggtaagaattccacgttgtggccgtggagacctgggctcgaatcccagcagccaca 27520682  T

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