View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_17 (Length: 448)
Name: NF19399_high_17
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_17 |
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| [»] scaffold0048 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 17 - 429
Target Start/End: Complemental strand, 44581231 - 44580819
Alignment:
| Q |
17 |
actataagcatccaccaaaaactgatggaataaacgcctagaaaacaataaagttgattgttcagtaatcctctgttggatcctataagcaaaccactct |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
44581231 |
actataagcatccaccaaaaactgatggaataaacgcctagaaaacaataaagttgattgttcaataatcctctgttggatcctataagcaaaccactct |
44581132 |
T |
|
| Q |
117 |
ctaagagtaattgtttttctttttatagtaggtgcgtttgaatcatcattcaactggatgtcattcctatatccatcttctcctcgagtaaagagcacgg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44581131 |
ctaagagtaattgtttttctttttatagtaggtgcgtttgaatcatcattcaactggatgtcattcctatatccatcttctcctcgaggaaagagcacgg |
44581032 |
T |
|
| Q |
217 |
gatattgtaatggcaaatatgaaggttcaaatactgagacacatttcaacgaacctgattgagtctccacaattatatctctctcaaagtcagctgcatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44581031 |
gatattgtaatggcaaatatgaaggttcaaatactgagacacgtttcaacgaacctgattgagtctccacaattatatctctctcaaagtcagctgcatc |
44580932 |
T |
|
| Q |
317 |
aaaatcaccaacaattaaagctgcaacttcagatgttgttggaagattgtacctcctaccatcacatcctctcttggctaatattctcaacttcagtatt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44580931 |
aaaatcaccaacaattaaagctgcaacttcagatgttgttggaagattgtacctcctaccatcacatcctctcttggctaatattctcaacttcagtatt |
44580832 |
T |
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| Q |
417 |
ggaacatcatttt |
429 |
Q |
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| T |
44580831 |
ggaacatcatttt |
44580819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 282 - 402
Target Start/End: Complemental strand, 922079 - 921959
Alignment:
| Q |
282 |
tccacaattatatctctctcaaagtcagctgcatcaaaatcaccaacaattaaagctgcaacttcagatgttgttggaagattgtacctcctaccatcac |
381 |
Q |
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|||||||||| ||| | |||||||||||||||||| |||||||||| | |||||||||||||||||||| | ||| | || ||||| ||||||||| |
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| T |
922079 |
tccacaattacatcccgctcaaagtcagctgcatcgtaatcaccaacgactaaagctgcaacttcagatgcagatggcaagttataccttctaccatcat |
921980 |
T |
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| Q |
382 |
atcctctcttggctaatattc |
402 |
Q |
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| T |
921979 |
atcctctcttgcctaaaattc |
921959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 293 - 369
Target Start/End: Original strand, 23310922 - 23310998
Alignment:
| Q |
293 |
atctctctcaaagtcagctgcatcaaaatcaccaacaattaaagctgcaacttcagatgttgttggaagattgtacc |
369 |
Q |
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|||||||||||||||||| ||||||||||| ||||| || || || |||||||| |||| ||||||||||| |||| |
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| T |
23310922 |
atctctctcaaagtcagccgcatcaaaatcgccaactatcaatgccgcaacttctgatgcagttggaagattatacc |
23310998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0048 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0048
Description:
Target: scaffold0048; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 294 - 346
Target Start/End: Complemental strand, 39590 - 39538
Alignment:
| Q |
294 |
tctctctcaaagtcagctgcatcaaaatcaccaacaattaaagctgcaacttc |
346 |
Q |
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||||||||||| ||| | |||||||||||||| ||||| |||||||||||||| |
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| T |
39590 |
tctctctcaaaatcaacagcatcaaaatcacccacaatcaaagctgcaacttc |
39538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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