View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_18 (Length: 437)
Name: NF19399_high_18
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 51239654 - 51240069
Alignment:
| Q |
18 |
atatgaatgtggatgctttaacccttctttagtaaataaggattttccagtgataatgacttgacctcggtatattttatatacactatgccaatgaaaa |
117 |
Q |
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| T |
51239654 |
atatgaatgtggatgctttaacccttctttagtaaataaggattttctagtgataatgacttgacctcggtgtattttatatacactatgccaatgaaaa |
51239753 |
T |
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| Q |
118 |
tgataagaaagaagaacaaatatgtattgcgacgtggatattgataaatgtacgacaacatttagtttaccgtttagggtttgatttaagtctaggcctt |
217 |
Q |
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| T |
51239754 |
tgataagaaagaagaactaatatgtatagcgacgtggatattgataaacgtacgacaacatttagtttaccgtttagggtttgatttaagtctaggcctt |
51239853 |
T |
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| Q |
218 |
tgaatacacaannnnnnnatttgaatgacaaatgttagtatattaacaatttcaaaataaatatttgttaatannnnnnnctt---------accaagac |
308 |
Q |
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|||| |||||| |||||||||||||||||||||| ||||| |||| |||||||||||||||||||| || |||||||| |
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| T |
51239854 |
tgaacacacaatttatttttttgaatgacaaatgttagtatgttaaccattttaaaataaatatttgttaatatgttaagatttttttcaacaccaagac |
51239953 |
T |
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| Q |
309 |
ttaaacccaagagagagatgatcatggtggtcatggacaaggccgctacaaacttgagctat----gtcaatgctaaccttttatgaacttctttttact |
404 |
Q |
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| T |
51239954 |
ttaaacccgagagagagatgatcatggtggtcatggacaaggccgctacaaacttgagctatgtccgtcaatgctaaccttttatgaacttctttttact |
51240053 |
T |
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| Q |
405 |
agtggatctgatttat |
420 |
Q |
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| T |
51240054 |
agtggatctgatttat |
51240069 |
T |
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