View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_2 (Length: 586)
Name: NF19399_high_2
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 13 - 569
Target Start/End: Complemental strand, 9073341 - 9072794
Alignment:
| Q |
13 |
aatatcacaatatgatgttgattatttatataaataaggaagaatggtcgataaaaatcagagtgaaaaaattgccttgaagaagctcagaaccctaatt |
112 |
Q |
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| T |
9073341 |
aatattacaatatgatgttgattatttatataaataaggaagaatggtcgataaaaatcagagtgaaagaattaccttgaagaagctcagaaccctaatt |
9073242 |
T |
|
| Q |
113 |
gatttgctccaacaagattggtgaaagaatgaatggatgctcttgaaactttatagggcgaaggtgttatacccttcatttaaaaatgttaatgcataca |
212 |
Q |
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| T |
9073241 |
gatttgctccaacaagattggtgaaagaatgaatggatgctcttgaaactttatagggcgaaggtgttatacccttcatttaaaaatgttaatgcataca |
9073142 |
T |
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| Q |
213 |
attatatattaacagtattctattctatataaaatcttgattcttccaaattgtaaccgatccaacaaatctttttagttacatgcatggtgcatacgac |
312 |
Q |
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| T |
9073141 |
at----tattaacagtattctattctatataaaatcttgattcttcaaaattgtaaccgatccaacaaatctttttagttacatgcatggtgcatacgac |
9073046 |
T |
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| Q |
313 |
gttcaatgatgctccaaacattcactttcctccaaaacctcataaataatcttagcaaaagacaccaaaacctcattcttcttcaattcccattttccac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9073045 |
gttcaatgatgctccaaacattcactttcctccaaaacctcataaataat-ttagcaaaagacaccaaaacctcattcttcttcaattcccattttccac |
9072947 |
T |
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| Q |
413 |
taattaattatcactaattgtcattgtttccattacacaattccccaaactccatcctcattatttctgaatatttctcattgtgactattcttcttctt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9072946 |
taattaattatcactaattgtcattgtttccattactcaattccccaaactccatcctcattatttctgaatatttctcattgtgactattcttcttctt |
9072847 |
T |
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| Q |
513 |
tttgtagaagtattgatgaatnnnnnnnnnntgcaatgcatggtttttgttttgctt |
569 |
Q |
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| T |
9072846 |
tttgtagaagtattgatcaat----aaaaaatgcaatgcatggtttttgttttgctt |
9072794 |
T |
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