View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_21 (Length: 366)
Name: NF19399_high_21
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_21 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 7 - 366
Target Start/End: Original strand, 16558674 - 16559033
Alignment:
| Q |
7 |
cttatggctgagcaggaagagaaaaatgacttaaacaggaaaatgcaacttttggaaaaagaatgtaagcttgaagtcccattccactcaattcatacca |
106 |
Q |
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| T |
16558674 |
cttatggctgagcaggaagagaaaaacgacttaaacaggaaaatgcaacttttggaaaaagaatgtaagcttgaagtcccattccactcaattcatacca |
16558773 |
T |
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| Q |
107 |
attacacttgcataaaaccagtttattgttttgtttgaatattttcatatcctatcactattgaaaattagtagtaattatctttttgtccactgcagtg |
206 |
Q |
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| T |
16558774 |
attacacttgcataaaaccagtttattgttttgtttgaatattttcatatcctatcactatataaaattagtagtaattatctttttgtccactgcagtg |
16558873 |
T |
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| Q |
207 |
cttctttttaaagcaaagatggttgatcaacaacaagaaatgacatcaaattggcaggtggaaacacttaagcagaaaatcatgaagctaagaaaggaga |
306 |
Q |
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| T |
16558874 |
cttctttttaaagcaaagatggttgatcaacaacaagaaatgacatcaaattggcaggtggaaacacttaagcagaaaatcatgaagctaagaaaggaga |
16558973 |
T |
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| Q |
307 |
acgaggtccttaaaagaaagttttctcatattgaagagggcaagtaatgatgaaaaactc |
366 |
Q |
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| T |
16558974 |
acgaggtccttaaaagaaagttctctcatattgaagagggcaagtaatgatgaaaaactc |
16559033 |
T |
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