View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_22 (Length: 354)
Name: NF19399_high_22
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_22 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 10 - 334
Target Start/End: Original strand, 51007816 - 51008142
Alignment:
| Q |
10 |
aagaatattagcaatagtacaaatcaactacaccttgtcaatcctgcaatctatgagtgtaacaatcttcaatttacctacatgtctatattctaattgg |
109 |
Q |
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| T |
51007816 |
aagaaaattagcaatagtacaaatcaactacaccttgtcaatcctgcaatctatgagtgtaacaatcttcaatttacctacatgtctatattctaattgg |
51007915 |
T |
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| Q |
110 |
acgtttgacataccaagtcagctagtccgctactcttaacatgnnnnnnnnn--tatggatctaaatctttacaatatacattttatttaatgtacaaca |
207 |
Q |
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| T |
51007916 |
acgtttgacataccaagtcagctagtccgctactcttaacatagaaaaaaaaaatatggatctaaatctttacaatatacattttatttaatgtacaaca |
51008015 |
T |
|
| Q |
208 |
aatcgttgtttaaattggagattcggtgatgttatgtcatacatacaagtacatcatgtactgaatttatttacaaataacaatacacaattgacaaata |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51008016 |
aatcgttgtttaaattggagattcggtgatgttatgtcatacatacaagtacatcatgtactgaatttatttacaaataacaatacacaattgacaaata |
51008115 |
T |
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| Q |
308 |
cttgaaggaattaatcatcaaatgcaa |
334 |
Q |
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||||||||||||||||||||||||||| |
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| T |
51008116 |
cttgaaggaattaatcatcaaatgcaa |
51008142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 16 - 336
Target Start/End: Complemental strand, 38740941 - 38740628
Alignment:
| Q |
16 |
attagcaatagtacaaatcaactacaccttgtcaatcctgcaatctatgagtgtaacaatcttcaatttacctacatgtctatattctaattggacgttt |
115 |
Q |
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|||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |
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| T |
38740941 |
attagcaatagtacaaattaactacaccttgtcaatcctacaatctatgagtgtaacaatcttccatttatctacatgtctatattctaattggac-ttt |
38740843 |
T |
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| Q |
116 |
gacataccaagtcagctagtccgctactcttaacatgnnnnnnnnntatggatctaaatctttacaatatacattttatttaatgtacaacaaatcgttg |
215 |
Q |
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|||| ||||||| ||| |||||||| || |||||||||||||||||||||||||||| ||| |||| ||||||||||| |||| |
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| T |
38740842 |
aacatcccaagtcttcta--------ctcttaacgtgaaaaaaa--tatggatctaaatctttacaatatacatcttagttaaagtacaacaaattgttg |
38740753 |
T |
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| Q |
216 |
tttaaattggagattcggtgatgttatgtcatacataca----agtacatcatgtactgaatttatttacaaataacaatacacaattgacaaatacttg |
311 |
Q |
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|||||||||||| ||| ||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38740752 |
tttaaattggaggttcagtgttgttatgtcatacatacatacaagtacatcatgtactgaatttatttacaaataacaatacacaattgacaaatacttg |
38740653 |
T |
|
| Q |
312 |
aaggaattaatcatcaaatgcaagt |
336 |
Q |
| |
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|||| |||||||||||||||||||| |
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| T |
38740652 |
aagggattaatcatcaaatgcaagt |
38740628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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