View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19399_high_26 (Length: 294)

Name: NF19399_high_26
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19399_high_26
NF19399_high_26
[»] chr7 (3 HSPs)
chr7 (187-279)||(25507035-25507127)
chr7 (187-279)||(25558671-25558763)
chr7 (26-90)||(25506878-25506942)


Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 187 - 279
Target Start/End: Original strand, 25507035 - 25507127
Alignment:
Q  187 agcagttaagtctgcggcaccagataaggcgccggcaaaaaatggatcaagcttcaatcagcttcttggtattaaaggagctgcccaagaatc 279  Q
    ||||||||| |||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25507035 agcagttaaatctgaggcaccggataaggcgcctgcgaaaaatggatcaagcttcaatcagcttcttggtattaaaggagctgcccaagaatc 25507127  T

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Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 187 - 279
Target Start/End: Complemental strand, 25558763 - 25558671
Alignment:
Q  187 agcagttaagtctgcggcaccagataaggcgccggcaaaaaatggatcaagcttcaatcagcttcttggtattaaaggagctgcccaagaatc 279  Q
    ||||||||| |||| |||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25558763 agcagttaaatctgaggcaccggataaggcgcctgcgaaaaatggatcaagcttcaatcagcttcttggtattaaaggagctgcccaagaatc 25558671  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 26 - 90
Target Start/End: Original strand, 25506878 - 25506942
Alignment:
Q  26 tgtttatgtggacattgcagagagaagattaactattagagcagctgaaactgatgcaaatgaag 90  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25506878 tgtttatgttggcattgcagagagaagattaactattagagcagctgaaactgatgcaaatgaag 25506942  T

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