View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_30 (Length: 258)
Name: NF19399_high_30
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 36461210 - 36460989
Alignment:
| Q |
17 |
atcattaatgatgcattgataatgtaaattgacttataataataccaaaatannnnnnnnncaaagtgacttgtaataatatacggagcaagtaagatag |
116 |
Q |
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| T |
36461210 |
atcattaatgatgcattgataatgtaaattgacttataataataccaaaatattttttttccaaagtgacttgtaataatatacggagcaagtaagatag |
36461111 |
T |
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| Q |
117 |
ttatgtttactatcatctaattcttttctcaatttgtgttaaatagtcaagtgcgacagacaaatatcgtggggcatcgaagggagtagtaaagaaacat |
216 |
Q |
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| T |
36461110 |
ttatgtttactatcatctgattcttttctcaatttatgttaaatagtcaagtgc----gacaaatatcgtggggcatcgaagggagtagtaaagaaacat |
36461015 |
T |
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| Q |
217 |
gcatatggcacttagaaattcaaaat |
242 |
Q |
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||||||||||| |||||||||||||| |
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| T |
36461014 |
gcatatggcacctagaaattcaaaat |
36460989 |
T |
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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 58
Target Start/End: Complemental strand, 31711645 - 31711607
Alignment:
| Q |
20 |
attaatgatgcattgataatgtaaattgacttataataa |
58 |
Q |
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|||||||||||||||||| ||||||||||| |||||||| |
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| T |
31711645 |
attaatgatgcattgatattgtaaattgacatataataa |
31711607 |
T |
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