View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_32 (Length: 257)
Name: NF19399_high_32
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_32 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 8 - 241
Target Start/End: Complemental strand, 49041750 - 49041517
Alignment:
| Q |
8 |
gagcacagagaatttaaccctcaattggtactttggaaatgatcgttcaatgcttctttctaattgcattttccgaatgggtggcgccgccatacttctt |
107 |
Q |
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| T |
49041750 |
gagcaccgagaatttaaccctcaattggtactttggaaatgatcgttcaatgcttctttctaattgcattttccgaatgggtggcgccgccatacttctt |
49041651 |
T |
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| Q |
108 |
tccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcgaacccataaaggagctgatgacaagaactataactgtgtttacc |
207 |
Q |
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| T |
49041650 |
tccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcgaacccataaaggagctgatgacaagaactataactgtgtttacc |
49041551 |
T |
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| Q |
208 |
agaaagaagatgagacagggaaagttggtgtttc |
241 |
Q |
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| T |
49041550 |
agaaagaagatgagacagggaaagttggtgtttc |
49041517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 227
Target Start/End: Original strand, 49039743 - 49039901
Alignment:
| Q |
69 |
aattgcattttccgaatgggtggcgccgccatacttctttccaataagtcctctgatcgaacccgttccaaatacaagcttgttcatacagttcgaaccc |
168 |
Q |
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| T |
49039743 |
aattgtattttccgaatgggaggagctgccgtacttctctccaataaatcctttgataggacccaatccaagtacaagttacttcatagcgttcgaactc |
49039842 |
T |
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| Q |
169 |
ataaaggagctgatgacaagaactataactgtgtttaccagaaagaagatgagacaggg |
227 |
Q |
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| T |
49039843 |
attcaggagccaatgacaagagctacaattgtgtgttccaaaaagaggacgaaacaggg |
49039901 |
T |
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