View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_33 (Length: 254)
Name: NF19399_high_33
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 4e-90; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 5154973 - 5154761
Alignment:
| Q |
13 |
aatatacataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaata |
112 |
Q |
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| T |
5154973 |
aatatacataatgaaaagcttttgttaattaatttcaattcctaccaatgatttataaccagtttttcattttatttaaagtctcttattatcgttaata |
5154874 |
T |
|
| Q |
113 |
attaatannnnnnngggatcttataattgtcttctaattcattcacttcatcacataaacttcataaataaattattgaaacaaaacgtaccttgaacat |
212 |
Q |
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| T |
5154873 |
attaatatttttttgggatcttataattgtcttctaattcattcacttcatcacataaactccataaataaattattgaaacaaaacgtaccttgagaag |
5154774 |
T |
|
| Q |
213 |
aaaagttttccat |
225 |
Q |
| |
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| T |
5154773 |
agaagttttccat |
5154761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 13 - 232
Target Start/End: Original strand, 4844108 - 4844328
Alignment:
| Q |
13 |
aatatacataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaata |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| | |
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| T |
4844108 |
aatatacataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccactttttcattttatttaaagtctcttatcatcgttaaaa |
4844207 |
T |
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| Q |
113 |
attaata-nnnnnnngggatcttataattgtcttctaattcattcacttcatcacataaacttcataaataaattattgaaacaaaacgtaccttgaaca |
211 |
Q |
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| T |
4844208 |
attaatattttctttgggattttataattgtcttctaattcattcacttcatcacataaactccataaataaattattgaaacaaaacgtaccttgaaca |
4844307 |
T |
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| Q |
212 |
taaaagttttccatcgaatta |
232 |
Q |
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| T |
4844308 |
tagaagtttttcatcgaatta |
4844328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 13 - 236
Target Start/End: Complemental strand, 5171567 - 5171343
Alignment:
| Q |
13 |
aatatacataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaata |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5171567 |
aatatacataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaaaa |
5171468 |
T |
|
| Q |
113 |
attaata-nnnnnnngggatcttataattgtcttctaattcattcacttcatcacataaacttcataaataaattattgaaacaaaacgtaccttgaaca |
211 |
Q |
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| T |
5171467 |
attaatattttcttcgagatcttataattgtcttctaattcattcacttcatcacataaactccacaaataaattattgaaacaaaatgtaccttgagca |
5171368 |
T |
|
| Q |
212 |
taaaagttttccatcgaattagaac |
236 |
Q |
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| ||||||| ||| |||||||||| |
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| T |
5171367 |
gagaagtttttcattgaattagaac |
5171343 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 5180924 - 5180707
Alignment:
| Q |
21 |
taatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaataattaata- |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
5180924 |
taatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtttcttattatcgttaaaaattaatat |
5180825 |
T |
|
| Q |
120 |
nnnnnnngggatcttataattgtcttc-taattcattcacttcatcacataaacttcataaataaattattgaaacaaaacgtaccttgaacataaaagt |
218 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || | |||| |
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| T |
5180824 |
tttcttggggatcttataattgtcttcttaattcattcacttcatcacataaactccataaataaattattgaaacaaaacgtaccttgagcagagaagt |
5180725 |
T |
|
| Q |
219 |
tttccatcgaattagaac |
236 |
Q |
| |
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||| |||| ||||||||| |
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| T |
5180724 |
ttttcatcaaattagaac |
5180707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 14 - 231
Target Start/End: Complemental strand, 5194192 - 5193975
Alignment:
| Q |
14 |
atatacataatgaaaagcttttgttaattaatttcaattcctaccaatgattcataaccagtttttcattttatttaaagtctcttattatcgttaataa |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
5194192 |
atatacataatgaaaagcttttgttaattaatttcaattcctaccgatgattcataaccactttttcattttatttaaagtctcttattatcgttaaaaa |
5194093 |
T |
|
| Q |
114 |
ttaatannnnnnngggatcttataattgtcttctaattcattcacttcatcacataaacttcataaataaattattgaaacaaaacgtaccttgaacata |
213 |
Q |
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||| |||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| || | |
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| T |
5194092 |
ttatattttcttggggatcttataattgtattctaattcattcacttcatcacataaactccataaataaattattgaaacaaaatgtaccttgagcaga |
5193993 |
T |
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| Q |
214 |
aaagttttccatcgaatt |
231 |
Q |
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||||||||||||||||| |
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| T |
5193992 |
gaagttttccatcgaatt |
5193975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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