View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_34 (Length: 253)
Name: NF19399_high_34
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_34 |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 30629212 - 30629440
Alignment:
| Q |
1 |
ctagaaaaagtcttgagaagaagaagtcaagctaagaagttggtccaaatattcagaacccaaatcttccaacaccaacacattttgtgaaacaatgtta |
100 |
Q |
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| T |
30629212 |
ctagaaaaagtcttgagaagaagaagtcaagctaagaagttggtccaaatattcagaacccaaatcttccaacaccaacacattttgtgaaacaatgtta |
30629311 |
T |
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| Q |
101 |
t------tctccatttccctttctacccttttggtctttttgcaattacttgctttagactttcttttcaaagtgtgtttcctcttgagtgctaaaacag |
194 |
Q |
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| T |
30629312 |
ttattattctccatttccctttctacccttttggtctttttgcaattacttgctttagactttcttttcaaagtgtgtttcctcttgagtgccaaaacag |
30629411 |
T |
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| Q |
195 |
gagaagaaccatctttttcccaagacttg |
223 |
Q |
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| T |
30629412 |
gagaagaaccatctttttcccaagacttg |
30629440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 27 - 223
Target Start/End: Original strand, 30623607 - 30623809
Alignment:
| Q |
27 |
tcaagctaagaagttggtccaaatattcagaacccaaatcttccaacaccaacacattttgtgaaacaatgttat------tctccatttccctttctac |
120 |
Q |
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|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| |
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| T |
30623607 |
tcaaactaagaagttggtccaaatattcagaacctaaatcttccaacaccaacacattttgtgaaacaatattattattattctccatttccctttctac |
30623706 |
T |
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| Q |
121 |
ccttttggtctttttgcaattacttgctttagactttcttttcaaagtgtgtttcctcttgagtgctaaaacaggagaagaaccatctttttcccaagac |
220 |
Q |
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| T |
30623707 |
ccttttggtctttttgcaattacttgctttagactttcttttcaaagtgtgtttcctcttgagtgccaaaacaggagaagaaccatctttttcccaagac |
30623806 |
T |
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| Q |
221 |
ttg |
223 |
Q |
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||| |
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| T |
30623807 |
ttg |
30623809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 87
Target Start/End: Complemental strand, 38831054 - 38831016
Alignment:
| Q |
49 |
atattcagaacccaaatcttccaacaccaacacattttg |
87 |
Q |
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| T |
38831054 |
atattcagaacccaaatcttccaacaccaacacattttg |
38831016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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