View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_39 (Length: 249)
Name: NF19399_high_39
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_39 |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 54714165 - 54714380
Alignment:
| Q |
12 |
agtgagatgaaccctattttattccatgcaaaacaataacgataggaagaaaataaaaatacttgagtgataatgtacactatggcaaaaacttcaattc |
111 |
Q |
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| T |
54714165 |
agtgatatgaagcctattttattccatgcaaaacaataacgataggaagaaaataaaaatact-gagtgatattgtacactatggcaaaaacttcaattc |
54714263 |
T |
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| Q |
112 |
ttctagttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagctggtat |
211 |
Q |
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| T |
54714264 |
ttctagttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagctggtat |
54714363 |
T |
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| Q |
212 |
tctgaataatgctgctg |
228 |
Q |
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|||||||| |||||||| |
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| T |
54714364 |
tctgaatagtgctgctg |
54714380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 54721085 - 54721309
Alignment:
| Q |
12 |
agtgagatgaaccctattttattccatgcaaaacaataacgataggaagaaaataaaaatacttgagtgataatgtacactatggcaaaaac-------- |
103 |
Q |
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| T |
54721085 |
agtgatatgaagcctattttattccatgcaaaacaataacgataggaaggaaataaagttact-gatagatattgtacactatggcaaaaaccagtactg |
54721183 |
T |
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| Q |
104 |
-ttcaattcttctagttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatga |
202 |
Q |
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| T |
54721184 |
tttcacttgttctacttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagatga |
54721283 |
T |
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| Q |
203 |
agctggtattctgaataatgctgctg |
228 |
Q |
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| T |
54721284 |
agttggtactctgaatagtgctgctg |
54721309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 54721298 - 54721357
Alignment:
| Q |
151 |
atagtgctgctgctgaaggtgaaggaagagctaatca---actggtgaaagatgaagctg |
207 |
Q |
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| T |
54721298 |
atagtgctgctgctgagggtgatggaagagttaatcaattactagtgaaagatgaagctg |
54721357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 1e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 112 - 228
Target Start/End: Original strand, 5297346 - 5297462
Alignment:
| Q |
112 |
ttctagttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagctggtat |
211 |
Q |
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|||||||||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||| |||||| |
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| T |
5297346 |
ttctagttgtccttgctgtggcattaattctgaatggctatagtgcttctgctgagggtgaagtaagagctaatcaactggtgaaagatgaatctggtac |
5297445 |
T |
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| Q |
212 |
tctgaataatgctgctg |
228 |
Q |
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| T |
5297446 |
tctgaatagtgctgctg |
5297462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 118 - 206
Target Start/End: Original strand, 5302783 - 5302868
Alignment:
| Q |
118 |
ttgtccttgctgtggcattatttctcaatggctatagtgctgctgctgaaggtgaaggaagagctaatcaactggtgaaagatgaagct |
206 |
Q |
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| T |
5302783 |
ttgtccttgttgtggcattatttgtgaatggctatagtgctgctg-tg--ggtgtgggaagagataatcaactggagaaagatgaagct |
5302868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 207
Target Start/End: Original strand, 5297451 - 5297510
Alignment:
| Q |
151 |
atagtgctgctgctgaaggtgaaggaagagctaatca---actggtgaaagatgaagctg |
207 |
Q |
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| T |
5297451 |
atagtgctgctgctgagggtgatggaagagttaatcaattactagtgaaagatgaagctg |
5297510 |
T |
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