View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_4 (Length: 577)
Name: NF19399_high_4
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 475; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Complemental strand, 36465571 - 36465036
Alignment:
| Q |
1 |
catccccattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgcacatgtgctagcaataaata |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||| |
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| T |
36465571 |
catccccattaccacaacacaaacaagtgggagagatccctacaccccatttactccttcaaaaat------------------gtgctggcaataaata |
36465490 |
T |
|
| Q |
101 |
aaagtttgaatgtgatatggttcatgccatttccaaagtgttttccaatctccctctgttgtcggaaaattctttaaagatcattatcaaggacttttat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36465489 |
aaagtttgaatgtgatatggttcatgccatttccaaagtgttttccaatctccctctgttgtcggaaaattctttaaagatcattatcaaggacttttat |
36465390 |
T |
|
| Q |
201 |
acttgtcacctcattgtatatgctgaatatcaaacctcaactttctaaccaatataacacgtgctacatgttgtcttagtgtgtgtcctatttttaaagt |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36465389 |
acttctcacctcattgtatatgctgaatatcaaacctcaactttctaaccaatataacacgtgctacatgttgtcttagtgtgtgtcctatttttaaagt |
36465290 |
T |
|
| Q |
301 |
atcatttcactattaaaatagataacatggatttttgtttgtttggtgaaggcatgattacaggtggagcaggagcaactgttttatacaacttgaggca |
400 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36465289 |
atcatttctctattaaaatagataacatggatttttgtttgtttggtgaaggcatgattacaggtggagcaggagcaactgttttatacaacttgaggca |
36465190 |
T |
|
| Q |
401 |
aagacatccaacacttgacctgcctgtgattgactatgatttagcacttctttttcaaccaatgttaatgcttggaatcagtcttggtgttgcttttaat |
500 |
Q |
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| T |
36465189 |
aagacacccaacacttgacctgcctgtgattgactatgatttagcacttctttttcaaccaatgttaatgcttggaatcagtcttggtgttgcttttaat |
36465090 |
T |
|
| Q |
501 |
gtcatttttcctgactggatgataacatctttgatactaatatttttcacaggt |
554 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36465089 |
gtcatttttcctgactggatgataacatctttgatactaatatttttcacaggt |
36465036 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 241 - 550
Target Start/End: Complemental strand, 36474548 - 36474218
Alignment:
| Q |
241 |
ctttctaaccaatataacacgtgctacatgttgtcttagtgt---gtgtcctattttt---aaagtatcatttcactattaaaatagataacatggatt- |
333 |
Q |
| |
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||||||||||||||||||| |||||| ||||||||||||||| | | ||||||| ||||||||||||| ||||||||||| ||| ||||||| |
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| T |
36474548 |
ctttctaaccaatataacatgtgctatatgttgtcttagtgtttcttataatatttttgtcaaagtatcatttctctattaaaatacgtaatatggattg |
36474449 |
T |
|
| Q |
334 |
------------tttgtttgtttg--gtgaaggcatgattacaggtggagcaggagcaactgttttatacaacttgaggcaaagacatccaacacttgac |
419 |
Q |
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|||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||||||||||| |
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| T |
36474448 |
aatgcatatgtgtttgtttgtttggtgtgaagtcatgattactggtggagcaggagcaactgttttatacaacttgaagaaaagacacccaacacttgac |
36474349 |
T |
|
| Q |
420 |
ctgcctgtgattgactatgatttagcacttctttttcaaccaatgttaatgcttggaatcagtcttggtgttgcttttaatgtcatttttcctgactgga |
519 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |
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| T |
36474348 |
ctgcctgtgattgactatgatttagcacttcttttccaaccaatgttaatgcttggaatcagtcttggtgttgctttcaatctcattttccctgactgga |
36474249 |
T |
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| Q |
520 |
tgataacatctttgatactaatatttttcac |
550 |
Q |
| |
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|| ||||| ||||| || | ||||||||||| |
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| T |
36474248 |
tgttaacaactttgctaatcatatttttcac |
36474218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 36895162 - 36895235
Alignment:
| Q |
7 |
cattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc |
80 |
Q |
| |
|
|||| ||||||||| ||||| |||||||| ||| |||||||||||||||||| ||||| |||||||||||| |
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| T |
36895162 |
catttccacaacacgggcaagtaggagagattccaccaccccatttactccttcggaaatttgtaagaatgcgc |
36895235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 5614664 - 5614603
Alignment:
| Q |
24 |
caagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgcacatg |
85 |
Q |
| |
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||||| |||||||| ||| || ||||| ||||||||||| |||| |||||||||||| |||| |
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| T |
5614664 |
caagtaggagagattccaccatcccatctactccttcaataatttgtaagaatgcgcccatg |
5614603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 34390551 - 34390623
Alignment:
| Q |
7 |
cattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc |
80 |
Q |
| |
|
|||| |||||||||| ||||| |||||||| ||| ||||| |||||||||||| ||||| |||||||||||| |
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|
| T |
34390551 |
catttccacaacacaggcaagtaggagagattccaccaccc-atttactccttcggaaatttgtaagaatgcgc |
34390623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 23085674 - 23085726
Alignment:
| Q |
24 |
caagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaat |
76 |
Q |
| |
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||||| |||||||| ||| |||||||||||||||||| |||||| |||||||| |
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| T |
23085674 |
caagtaggagagattccaccaccccatttactccttcgaaaatttgtaagaat |
23085726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 76
Target Start/End: Complemental strand, 23722740 - 23722671
Alignment:
| Q |
7 |
cattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaat |
76 |
Q |
| |
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|||| ||||||||| |||||| |||||||| ||| ||||||||||||||||| ||||| |||||||| |
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| T |
23722740 |
catttccacaacacggacaagtaggagagattccaccaccccatttactccttttgaaatttgtaagaat |
23722671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 27156912 - 27156985
Alignment:
| Q |
7 |
cattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc |
80 |
Q |
| |
|
|||| ||||||||| ||||| |||||||| ||| |||||||||||||||||| ||||| ||||| |||||| |
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| T |
27156912 |
catttccacaacacgggcaagtaggagagattccaccaccccatttactccttcggaaatttgtaagtatgcgc |
27156985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 7305827 - 7305900
Alignment:
| Q |
7 |
cattaccacaacacaaacaagtgggagagatcccaacaccccatttactccttcaaaaattggtaagaatgcgc |
80 |
Q |
| |
|
|||| ||||||||| ||||| |||||||| ||| || ||| |||||| ||||||||||| |||||||||||| |
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| T |
7305827 |
catttccacaacacgggcaagtaggagagattccaccatcccgtttacttcttcaaaaatttgtaagaatgcgc |
7305900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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