View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_6 (Length: 546)
Name: NF19399_high_6
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 507; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 507; E-Value: 0
Query Start/End: Original strand, 12 - 530
Target Start/End: Complemental strand, 33463240 - 33462722
Alignment:
| Q |
12 |
catcatcaatggctttgtagttctcaaagtgcatattgatgatttcaagtgatctatcttcacaatgtgaaacctgcataataggagcatcagaaaatag |
111 |
Q |
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| T |
33463240 |
catcgtcaatggctttgtagttctcaaagtgcatattgatgatttcaagtgatctatcttcacaatgtgaaacctgcataataggagcatcagaaaatag |
33463141 |
T |
|
| Q |
112 |
atgaataaaatcatcaacagcacttggataatattccttctcatctttttctgcatctttttcatcagagttcaagtttgaaactgaactcgatcgatcc |
211 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
33463140 |
atgaataaaatcatcaacagcacttggataatcttccttctcatctttttctgcatccttttcatcagagttcaagtttgaaactgaactcgatcgatcc |
33463041 |
T |
|
| Q |
212 |
tcggccacctctctgaggataaaactttcaatatcagaaaatatctgatgctcatttaatatctgttcatcatgatcatgatcttctccattgtttatct |
311 |
Q |
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| T |
33463040 |
tcggccacctctctgaggataaaactttcaatatcagaaaatatctgatgctcatttaatatctgttcatcatgatcatgatcttctccattgtttatct |
33462941 |
T |
|
| Q |
312 |
caaattcaatgtatttttcgccttctttgtcatcttctattgattcaacaatgagtgatcctttgcttaaatagtttccatcataccaagaaggcttcaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33462940 |
caaattcaatgtatttttcgccttctttgtcatcttctattgattcaacaatgagtgatcctttgcttaaatagtttccatcataccaagaaggcttcaa |
33462841 |
T |
|
| Q |
412 |
cagataaggagggtaaatttggttattcaagctctcattgcagcaagaacacctatttaaactctcttcattttcatcatgtttttcatggcctaaccat |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33462840 |
cagataaggagggtaaatttggttattcaagctctcattgcagcaagaacacctatttaaactctcttcattttcatcatgtttttcatggcctaaccat |
33462741 |
T |
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| Q |
512 |
ggaataaaaccaatcctat |
530 |
Q |
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||||||||||||||||||| |
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| T |
33462740 |
ggaataaaaccaatcctat |
33462722 |
T |
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