View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_high_7 (Length: 540)
Name: NF19399_high_7
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 463; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 6 - 525
Target Start/End: Complemental strand, 51070306 - 51069782
Alignment:
| Q |
6 |
agattattctcatatcatcatatattttaatttgtttgtaatggaaacaacaaaaatagttgaagaagaagatgttgtgattgtgggagctggaattgct |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
51070306 |
agattactctcatatcatcatatattttaatttgtttgtaatggaaacaacaaaaatatttgaagaagaagatgttgtgattgtgggagctggaattgct |
51070207 |
T |
|
| Q |
106 |
ggccttgctactgccttaggacttcacaggtaccaattctattctcttcattatagtgatgtatgtg----tgcatacatattcattgttatcgttggca |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
51070206 |
ggccttgctactgccttaggacttcacaggtaccaattctattctcttcattatagtgatgtatgtgcgcatgcatacatattcattgttatcgttggca |
51070107 |
T |
|
| Q |
202 |
ggttaggtgtaagaagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttggatgc |
301 |
Q |
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| T |
51070106 |
ggttaggtgtaagaagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttggatgc |
51070007 |
T |
|
| Q |
302 |
tgttggtgttggagatatcctccgccacaaacatatacatctttatgggtattttgcacattaccaacttaatgtttttgatattat-nnnnnnngtaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
51070006 |
tgttggtgttggagatatcctccgccacaaacatatacatctttatgggtattttgcacattaccaacttaatgtttttgatattataaaaaaaagtaaa |
51069907 |
T |
|
| Q |
401 |
tcagcttaagtacttgaattgggtgcaggaatgtgactacttctttgattacaggacaacaattagcaactatgtctttcagggacaaaggaaagctgta |
500 |
Q |
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| T |
51069906 |
tcaacttaagtacttgaattgggtgcaggaatgtgactacttctttgattacaggacagcaattagcaactatgtctttcagggacaaaggaaagctgta |
51069807 |
T |
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| Q |
501 |
agtacaaaattgtattattgtatct |
525 |
Q |
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| T |
51069806 |
agtacaaaattgtattattgtatct |
51069782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 199 - 335
Target Start/End: Complemental strand, 51033425 - 51033289
Alignment:
| Q |
199 |
gcaggttaggtgtaagaagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttgga |
298 |
Q |
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|||| ||||| || |||||||||||||| |||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||| | |||||| |
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| T |
51033425 |
gcagattaggcgttagaagtttggtattagaatcttccgatagtttgagagtaagcggatttgctttaacaatatgggaaaatgcttggaaggtcttgga |
51033326 |
T |
|
| Q |
299 |
tgctgttggtgttggagatatcctccgccacaaacat |
335 |
Q |
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| T |
51033325 |
tgttgttggcgtaggagatatccttcgccaccaacat |
51033289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 214 - 352
Target Start/End: Complemental strand, 51036677 - 51036539
Alignment:
| Q |
214 |
gaagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttggatgctgttggtgttgg |
313 |
Q |
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|||| ||| |||| |||||||| ||| |||||||||| | ||||||||||||| ||||||| ||||||||||||| || ||||||| |||||||||||| |
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| T |
51036677 |
gaagcttgatattagaatcttcggatggtttgagagtgagtggatttgctttaataatatggaaaaatgcttggaaggcattggatgttgttggtgttgg |
51036578 |
T |
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| Q |
314 |
agatatcctccgccacaaacatatacatctttatgggta |
352 |
Q |
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||| ||||| || ||||||||| |||| ||||||||||| |
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| T |
51036577 |
agacatccttcgtcacaaacatctacaactttatgggta |
51036539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 215 - 340
Target Start/End: Original strand, 40612631 - 40612756
Alignment:
| Q |
215 |
aagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttggatgctgttggtgttgga |
314 |
Q |
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|||||||||||| |||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||| |||||||||| ||| ||||||||| |
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| T |
40612631 |
aagtttggtattagaatcttcagatagtttgcgagtcggtggatttgctttaacgttatgggaaaatgcttggaaggccttggatgttgtaggtgttgga |
40612730 |
T |
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| Q |
315 |
gatatcctccgccacaaacatataca |
340 |
Q |
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|||||||||||||| ||||| |||| |
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| T |
40612731 |
aatatcctccgccaccaacatctaca |
40612756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 215 - 352
Target Start/End: Complemental strand, 51066949 - 51066812
Alignment:
| Q |
215 |
aagtttggtattggaatcttcagatagtttgagagtaactggatttgctttaggaatatgggaaaatgcttggaaagccttggatgctgttggtgttgga |
314 |
Q |
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|||||||||||| |||||||| ||||| |||||||| ||||||||||||| ||||||||||||||||||| || ||||||| ||||||||||||| |
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| T |
51066949 |
aagtttggtattagaatcttctgatagcttgagagttggtggatttgctttaacggtatgggaaaatgcttggaaggcgttggatgttgttggtgttgga |
51066850 |
T |
|
| Q |
315 |
gatatcctccgccacaaacatatacatctttatgggta |
352 |
Q |
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|||||||||||| ||||| |||| ||| ||||||| |
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| T |
51066849 |
accatcctccgccaccaacatctacaacttcatgggta |
51066812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 40611750 - 40611790
Alignment:
| Q |
70 |
gaagaagatgttgtgattgtgggagctggaattgctggcct |
110 |
Q |
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| T |
40611750 |
gaagaagatattgtgattgtgggagctggaattgctggcct |
40611790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 51036967 - 51036900
Alignment:
| Q |
70 |
gaagaagatgttgtgattgtgggagctggaattgctggccttgctactgccttaggacttcacaggta |
137 |
Q |
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||||||||| |||||||||||||||||||||||||||| || | || ||||||||||| ||||||| |
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| T |
51036967 |
gaagaagatattgtgattgtgggagctggaattgctggactcacaacatccttaggactttacaggta |
51036900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 70 - 107
Target Start/End: Complemental strand, 51033559 - 51033522
Alignment:
| Q |
70 |
gaagaagatgttgtgattgtgggagctggaattgctgg |
107 |
Q |
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||||||||| |||||||||||||||||||||||||||| |
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| T |
51033559 |
gaagaagatattgtgattgtgggagctggaattgctgg |
51033522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 488
Target Start/End: Complemental strand, 51064596 - 51064519
Alignment:
| Q |
412 |
acttgaattgg-gtgcaggaatgtgactacttctttgattacaggacaacaattagcaactatgtctttcagggacaa |
488 |
Q |
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||||||||||| ||||||||||||||||||||||||| ||| || ||||| | |||||| |||||||| |||||| |
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| T |
51064596 |
acttgaattggagtgcaggaatgtgactacttctttggttatggggcaacagacatcaactacgtctttcatggacaa |
51064519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 424 - 488
Target Start/End: Complemental strand, 51035913 - 51035849
Alignment:
| Q |
424 |
tgcaggaatgtgactacttctttgattacaggacaacaattagcaactatgtctttcagggacaa |
488 |
Q |
| |
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|||||| ||||||||||||||||||| || || |||||| || |||| | |||||||| |||||| |
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| T |
51035913 |
tgcaggcatgtgactacttctttgataacggggcaacaaatatcaaccacgtctttcatggacaa |
51035849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 51067607 - 51067543
Alignment:
| Q |
74 |
aagatgttgtgattgtgggagctggaattgctggccttgctactgccttaggacttcacaggtac |
138 |
Q |
| |
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||||| ||||||| || |||||||||||||||||||| | || |||| ||||||||||||||| |
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| T |
51067607 |
aagatattgtgatcgtaggagctggaattgctggcctcacaacatccttgggacttcacaggtac |
51067543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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