View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_low_10 (Length: 506)
Name: NF19399_low_10
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 233 - 492
Target Start/End: Original strand, 52987302 - 52987559
Alignment:
| Q |
233 |
gtatactagtatccacattgccaaagtgacaaggatgccacgtcactaaaactcaccacctcatcgtcaaattggggaaagttttgtgagggaccttgaa |
332 |
Q |
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| T |
52987302 |
gtatactagtatccacattggcaaagtgacaaggatgccacgtcactaaaactcaccacctcatcgtcaaattggggaaagttttgtgagggaccttgaa |
52987401 |
T |
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| Q |
333 |
atcaaaaaagaaataaatgtggggtttaaatcgttcnnnnnnnttatatgagtgaaaattttttagattgagaaacatgaaggttaaaagtgtgattagg |
432 |
Q |
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|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52987402 |
atcaaaaaagaaataaatgtggggtttaaatcgttcaaaaaaat--tatgagtgaaaattttttagattgagaaacatgaaggttaaaagtgtgattagg |
52987499 |
T |
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| Q |
433 |
tctagttgattcggtttgtcatttcgtgcttattaaatgatgaagaaagtaattttttat |
492 |
Q |
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| T |
52987500 |
cttagttgattcggtttgtcatttcgtgcttattaaatgatgaagaaagtaattttttat |
52987559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 17 - 88
Target Start/End: Original strand, 52987110 - 52987181
Alignment:
| Q |
17 |
aattgaaggtgaaaatgatgatttgggaattgaaagcaaaaccctaatttaagattcagaattaacagactt |
88 |
Q |
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| T |
52987110 |
aattgaaggtgaaaatgatgatttgggaattgaaagcaaaaccctaatttaagattcagaattaacagactt |
52987181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 127 - 169
Target Start/End: Original strand, 52987196 - 52987238
Alignment:
| Q |
127 |
atttatataggttttggtgtcaagaaggtgggacccggattct |
169 |
Q |
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| T |
52987196 |
atttatataggttttggtgtcaagaaggtgggacccggattct |
52987238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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