View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19399_low_11 (Length: 503)

Name: NF19399_low_11
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19399_low_11
NF19399_low_11
[»] chr7 (13 HSPs)
chr7 (145-303)||(1552510-1552667)
chr7 (379-495)||(1536522-1536638)
chr7 (379-495)||(41218850-41218961)
chr7 (379-482)||(18238881-18238985)
chr7 (383-482)||(34353863-34353963)
chr7 (220-306)||(1104061-1104147)
chr7 (220-306)||(1543265-1543351)
chr7 (379-489)||(48218846-48218945)
chr7 (379-440)||(38791578-38791637)
chr7 (383-440)||(31823733-31823788)
chr7 (383-416)||(21154345-21154378)
chr7 (124-154)||(1104205-1104235)
chr7 (124-154)||(1543177-1543207)
[»] chr5 (13 HSPs)
chr5 (379-495)||(41758205-41758321)
chr5 (379-459)||(3460860-3460940)
chr5 (379-489)||(39223437-39223548)
chr5 (379-489)||(6271301-6271410)
chr5 (418-479)||(1974814-1974875)
chr5 (379-489)||(7083415-7083522)
chr5 (383-479)||(1172394-1172487)
chr5 (379-479)||(6427824-6427921)
chr5 (379-433)||(22704422-22704476)
chr5 (379-419)||(1974862-1974902)
chr5 (379-440)||(40016638-40016697)
chr5 (386-415)||(3460936-3460965)
chr5 (379-408)||(22302409-22302438)
[»] chr6 (7 HSPs)
chr6 (379-495)||(14154045-14154161)
chr6 (379-495)||(319749-319864)
chr6 (379-482)||(802355-802461)
chr6 (379-440)||(24174143-24174204)
chr6 (379-440)||(35054039-35054098)
chr6 (379-419)||(11718251-11718291)
chr6 (379-440)||(16444999-16445058)
[»] chr4 (17 HSPs)
chr4 (379-495)||(886473-886589)
chr4 (379-489)||(38131978-38132088)
chr4 (379-489)||(27760579-27760690)
chr4 (379-472)||(14329531-14329624)
chr4 (385-482)||(46814550-46814647)
chr4 (418-489)||(31823484-31823556)
chr4 (418-495)||(32936220-32936297)
chr4 (383-479)||(1227395-1227488)
chr4 (379-479)||(49065011-49065108)
chr4 (379-481)||(21712595-21712693)
chr4 (379-419)||(31823543-31823583)
chr4 (379-419)||(32936284-32936324)
chr4 (379-440)||(28797357-28797416)
chr4 (379-440)||(33162370-33162429)
chr4 (379-440)||(36173862-36173921)
chr4 (379-408)||(14989780-14989809)
chr4 (379-408)||(46567849-46567878)
[»] chr1 (15 HSPs)
chr1 (379-495)||(48567287-48567403)
chr1 (379-489)||(46179174-46179285)
chr1 (379-479)||(41872252-41872352)
chr1 (383-482)||(3659625-3659724)
chr1 (379-489)||(21483441-21483545)
chr1 (379-481)||(46924316-46924414)
chr1 (379-481)||(39223242-39223340)
chr1 (379-481)||(30308890-30308988)
chr1 (379-418)||(49597783-49597822)
chr1 (379-440)||(39650916-39650975)
chr1 (383-440)||(18171415-18171472)
chr1 (418-489)||(49597723-49597795)
chr1 (379-440)||(47486117-47486176)
chr1 (382-440)||(50066177-50066233)
chr1 (379-408)||(49594621-49594650)
[»] chr2 (7 HSPs)
chr2 (379-479)||(29132118-29132218)
chr2 (379-489)||(42121285-42121395)
chr2 (380-489)||(22495383-22495492)
chr2 (379-489)||(2154712-2154822)
chr2 (379-433)||(8556819-8556873)
chr2 (379-440)||(12967950-12968009)
chr2 (396-440)||(18394264-18394308)
[»] chr3 (11 HSPs)
chr3 (379-489)||(42385089-42385199)
chr3 (379-482)||(25575369-25575473)
chr3 (383-489)||(42994211-42994317)
chr3 (383-451)||(36720151-36720219)
chr3 (379-440)||(35485979-35486038)
chr3 (379-440)||(42948092-42948151)
chr3 (379-440)||(44834157-44834216)
chr3 (379-410)||(39415835-39415866)
chr3 (379-419)||(16932381-16932419)
chr3 (379-408)||(25744542-25744571)
chr3 (379-408)||(47559854-47559883)
[»] scaffold0861 (1 HSPs)
scaffold0861 (379-482)||(3153-3256)
[»] chr8 (10 HSPs)
chr8 (413-495)||(34471070-34471152)
chr8 (418-495)||(28704523-28704600)
chr8 (379-489)||(23542175-23542290)
chr8 (379-481)||(40416331-40416429)
chr8 (418-474)||(4640354-4640410)
chr8 (379-419)||(4640397-4640437)
chr8 (96-152)||(18755714-18755769)
chr8 (379-419)||(28704587-28704627)
chr8 (220-274)||(18755809-18755863)
chr8 (383-440)||(43635839-43635894)


Alignment Details
Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 145 - 303
Target Start/End: Original strand, 1552510 - 1552667
Alignment:
Q  145 atttataagaaaaacaagctttgaacaactttatgcttttaacaattttatgtgtggacatgaaaaacaagctttgaagcatctacccctctatttacgt 244  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| ||||||||    
T  1552510 atttataagaaaaacaagctttgaacaactttatgcttttaacaattt-atgtgcggacgtgaaaaacaagctttgaagcatctacccctccatttacgt 1552608  T
Q  245 tcaataactttatgtcaaattaagctctgcaataattcttctcaagtatcattttcgat 303  Q
    |||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  1552609 tcatcaactttatgtcaaattaagctcttcaataattcttctcaagtatcattttcgat 1552667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 379 - 495
Target Start/End: Original strand, 1536522 - 1536638
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1536522 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaa 1536621  T
Q  479 aagtaatcaatattctt 495  Q
    |||||||||||||||||    
T  1536622 aagtaatcaatattctt 1536638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 379 - 495
Target Start/End: Original strand, 41218850 - 41218961
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    ||||||||||||||||||||||||||     ||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||    
T  41218850 tctcattttattaatagaattcatac-----aataattgatacaataatttattcaaattcactaatttattctacttattttctcccttttggggtaaa 41218944  T
Q  479 aagtaatcaatattctt 495  Q
    ||||||||||| |||||    
T  41218945 aagtaatcaatcttctt 41218961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 379 - 482
Target Start/End: Original strand, 18238881 - 18238985
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 477  Q
    ||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||    
T  18238881 tctcaatttattaaaagaattcatacaatacaataattgatacaataatttattccaattcactaaattattctacttattttctccctctttggggtaa 18238980  T
Q  478 aaagt 482  Q
     ||||    
T  18238981 gaagt 18238985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 34353863 - 34353963
Alignment:
Q  383 attttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccctttt-ggggtaaaaag 481  Q
    |||||||||||||||||||||||||||||||||| |||||||| || |||| |||||| ||||||||||||||||||||||||||||| |||||||||||    
T  34353863 attttattaatagaattcatacaatacaataattgatacaatagttcattcgaattcactaatttattctacttattttctcccttttgggggtaaaaag 34353962  T
Q  482 t 482  Q
    |    
T  34353963 t 34353963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 220 - 306
Target Start/End: Complemental strand, 1104147 - 1104061
Alignment:
Q  220 gaagcatctacccctctatttacgttcaataactttatgtcaaattaagctctgcaataattcttctcaagtatcattttcgatcct 306  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| |||| |||||||||||||||||| | ||||||||||||    
T  1104147 gaagcatctacccctccatttacgttcaacaactttatgtcaaattaacctcttcaataattcttctcaagtcttattttcgatcct 1104061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 220 - 306
Target Start/End: Original strand, 1543265 - 1543351
Alignment:
Q  220 gaagcatctacccctctatttacgttcaataactttatgtcaaattaagctctgcaataattcttctcaagtatcattttcgatcct 306  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||| |||| |||||||||||||||||| | ||||||||||||    
T  1543265 gaagcatctacccctccatttacgttcaacaactttatgtcaaattaacctcttcaataattcttctcaagtcttattttcgatcct 1543351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 379 - 489
Target Start/End: Complemental strand, 48218945 - 48218846
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 477  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||          ||||||||||||||||| ||||||||||    
T  48218945 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca----------ctacttattttctccctctttggggtaa 48218858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 38791637 - 38791578
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  38791637 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 38791578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 31823733 - 31823788
Alignment:
Q  383 attttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  31823733 attttattaata--attcatacaatacaataattcttacaataatttattcaaattca 31823788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 383 - 416
Target Start/End: Complemental strand, 21154378 - 21154345
Alignment:
Q  383 attttattaatagaattcatacaatacaataatt 416  Q
    ||||||||||||||||||||||||||||||||||    
T  21154378 attttattaatagaattcatacaatacaataatt 21154345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 154
Target Start/End: Complemental strand, 1104235 - 1104205
Alignment:
Q  124 tgtcacacgctaatttgattcatttataaga 154  Q
    |||||||||||||||||||||||||||||||    
T  1104235 tgtcacacgctaatttgattcatttataaga 1104205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 154
Target Start/End: Original strand, 1543177 - 1543207
Alignment:
Q  124 tgtcacacgctaatttgattcatttataaga 154  Q
    |||||||||||||||||||||||||||||||    
T  1543177 tgtcacacgctaatttgattcatttataaga 1543207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 105; Significance: 3e-52; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 379 - 495
Target Start/End: Original strand, 41758205 - 41758321
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41758205 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaa 41758304  T
Q  479 aagtaatcaatattctt 495  Q
    ||||||||||| |||||    
T  41758305 aagtaatcaatcttctt 41758321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 379 - 459
Target Start/End: Original strand, 3460860 - 3460940
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttatt 459  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||    
T  3460860 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttatt 3460940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 379 - 489
Target Start/End: Complemental strand, 39223548 - 39223437
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttgggg-taa 477  Q
    |||||||||||||||||||||||||||| | ||||||| |||||||||||||||| |||| | |||||||||||||||||||||||||| |||||| |||    
T  39223548 tctcattttattaatagaattcatacaacagaataattgatacaataatttattcgaatttactaatttattctacttattttctccctcttggggataa 39223449  T
Q  478 aaagtaatcaat 489  Q
    ||||| ||||||    
T  39223448 aaagtgatcaat 39223437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 379 - 489
Target Start/End: Complemental strand, 6271410 - 6271301
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| |||| |||| ||||||| ||||||| |||||||||||    
T  6271410 tctcattttattaatagaattcatacaatacaattattgatacaataatttattcgaattcactaatatattatacttatattctccc-tttggggtaaa 6271312  T
Q  479 aagtaatcaat 489  Q
    |||| ||||||    
T  6271311 aagtgatcaat 6271301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 418 - 479
Target Start/End: Complemental strand, 1974875 - 1974814
Alignment:
Q  418 atacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaa 479  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  1974875 atacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaaa 1974814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 379 - 489
Target Start/End: Original strand, 7083415 - 7083522
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 477  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||    | |||||||||||||||||| ||||||||||    
T  7083415 tctcattttattaatagaattcatacaatacaataattgatacaacaatttattcgaaatcacta----aatctacttattttctccctctttggggtaa 7083510  T
Q  478 aaagtaatcaat 489  Q
    || || ||||||    
T  7083511 aaggtgatcaat 7083522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 383 - 479
Target Start/End: Original strand, 1172394 - 1172487
Alignment:
Q  383 attttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaaaa 479  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||| |||||    ||| | |||||||||||||||||| ||||||||||||    
T  1172394 attttattaatagaattcatacaatacaataactgatacaataatttattcgaattc----attaaatctacttattttctccctctttggggtaaaa 1172487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 379 - 479
Target Start/End: Complemental strand, 6427921 - 6427824
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 477  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||    | |||||||||||||||||| ||||||||||    
T  6427921 tctcattttattaatagaattcatacaatacaataattgatacaacaatttattcaaaatcacta----aatctacttattttctccctctttggggtaa 6427826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 379 - 433
Target Start/End: Original strand, 22704422 - 22704476
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattc 433  Q
    |||||||||||||||||||||||||||||||||||||| |||||| |||||||||    
T  22704422 tctcattttattaatagaattcatacaatacaataattgatacaacaatttattc 22704476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 1974902 - 1974862
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttat 419  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1974902 tctcattttattaatagaattcatacaatacaataatttat 1974862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 40016638 - 40016697
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  40016638 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 40016697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 415
Target Start/End: Original strand, 3460936 - 3460965
Alignment:
Q  386 ttattaatagaattcatacaatacaataat 415  Q
    ||||||||||||||||||||||||||||||    
T  3460936 ttattaatagaattcatacaatacaataat 3460965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 408
Target Start/End: Original strand, 22302409 - 22302438
Alignment:
Q  379 tctcattttattaatagaattcatacaata 408  Q
    ||||||||||||||||||||||||||||||    
T  22302409 tctcattttattaatagaattcatacaata 22302438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 101; Significance: 8e-50; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 379 - 495
Target Start/End: Complemental strand, 14154161 - 14154045
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  14154161 tctcattttattaattgaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaa 14154062  T
Q  479 aagtaatcaatattctt 495  Q
    ||||||||||| |||||    
T  14154061 aagtaatcaatcttctt 14154045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 379 - 495
Target Start/End: Complemental strand, 319864 - 319749
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  319864 tctcattttattaatagaattcatacaatacaataattgatacaatagtttattccaattcactaatttattctacttattttctccc-tttggggtaaa 319766  T
Q  479 aagtaatcaatattctt 495  Q
    ||||||||||| |||||    
T  319765 aagtaatcaatcttctt 319749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 379 - 482
Target Start/End: Original strand, 802355 - 802461
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataat---ttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggt 475  Q
    |||||||||||||||||||||||||||||||||||||   | |||||| ||||||||| || ||| |||||||||||||||||||||||||| || || |    
T  802355 tctcattttattaatagaattcatacaatacaataattaataatacaacaatttattcgaaatcactaatttattctacttattttctccctattaggat 802454  T
Q  476 aaaaagt 482  Q
    |||||||    
T  802455 aaaaagt 802461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 24174204 - 24174143
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||    
T  24174204 tctcattttattaatagaattcataaaatacaataattgatacaataatttattcaaattca 24174143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 35054098 - 35054039
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  35054098 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 35054039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 11718251 - 11718291
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttat 419  Q
    ||||||||||||||||||||| |||||||||||||||||||    
T  11718251 tctcattttattaatagaatttatacaatacaataatttat 11718291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 16445058 - 16444999
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||||||  |||||||||||| |||||||  ||||||||||||||| ||||||    
T  16445058 tctcattttattaata--attcatacaatataataattcttacaataatttattcaaattca 16444999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 101; Significance: 8e-50; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 379 - 495
Target Start/End: Original strand, 886473 - 886589
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  886473 tctccttttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaa 886572  T
Q  479 aagtaatcaatattctt 495  Q
    ||||||||||| |||||    
T  886573 aagtaatcaatcttctt 886589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 379 - 489
Target Start/End: Complemental strand, 38132088 - 38131978
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  38132088 tctcattttattaatagaatttatacaatacaataattgatacaataattgattccaattcactaatttattctacttattttctcccttttggggtaaa 38131989  T
Q  479 aagtaatcaat 489  Q
    |||||||||||    
T  38131988 aagtaatcaat 38131978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 379 - 489
Target Start/End: Original strand, 27760579 - 27760690
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 477  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||| ||||||||||    
T  27760579 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctatttattttctccctctttggggtaa 27760678  T
Q  478 aaagtaatcaat 489  Q
    ||||| ||||||    
T  27760679 aaagtgatcaat 27760690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 379 - 472
Target Start/End: Complemental strand, 14329624 - 14329531
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttgg 472  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  14329624 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctccctcttgg 14329531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 385 - 482
Target Start/End: Complemental strand, 46814647 - 46814550
Alignment:
Q  385 tttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaaagt 482  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  46814647 tttattaatagaattcatacaatacaataattgatacaataatttattcgaattcacaaatttattctacttattttctccctcttggggtaaaaagt 46814550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 31823556 - 31823484
Alignment:
Q  418 atacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaaaaagtaatcaat 489  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31823556 atacaataatttattccaattcactaatttattctacttattttctccctctttggggtaaaaagtaatcaat 31823484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 418 - 495
Target Start/End: Complemental strand, 32936297 - 32936220
Alignment:
Q  418 atacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaaagtaatcaatattctt 495  Q
    ||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||||||||||| | |||| |||||    
T  32936297 atacaataatttattccaactcactaatttattctacttattttctccctcttggggtaaaaagtgaccaatcttctt 32936220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 383 - 479
Target Start/End: Original strand, 1227395 - 1227488
Alignment:
Q  383 attttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaaaa 479  Q
    |||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||| ||    | |||||||||||||| ||| ||||||||||||    
T  1227395 attttattaatagaattcgtacaatacaataattgatacaataatttattcgaattcacta----aatctacttattttcttcctctttggggtaaaa 1227488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 379 - 479
Target Start/End: Original strand, 49065011 - 49065108
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 477  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||    | |||||||||||||||||| ||||| ||||    
T  49065011 tctcattttattaatagaattcatacaatacaataattgatacaacaatttattcgaaatcacta----aatctacttattttctccctctttggagtaa 49065106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 481
Target Start/End: Original strand, 21712595 - 21712693
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||||||||||| |||||| | ||||||| || ||||||| |    ||||||||||||| ||| || |||| ||    
T  21712595 tctcattttattaatagaattcatacaatacaataattgatacaacagtttattcgaaatcagtaaat----ctacttattttcttcctctttgggttaa 21712690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 31823583 - 31823543
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttat 419  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31823583 tctcattttattaatagaattcatacaatacaataatttat 31823543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 32936324 - 32936284
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttat 419  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  32936324 tctcattttattaatagaattcatacaatacaataatttat 32936284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 28797416 - 28797357
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  28797416 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 28797357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 33162429 - 33162370
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  33162429 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 33162370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Original strand, 36173862 - 36173921
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||| ||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  36173862 tctcatttttttaata--attcatacaatacaataattcttacaataatttattcaaattca 36173921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 408
Target Start/End: Original strand, 14989780 - 14989809
Alignment:
Q  379 tctcattttattaatagaattcatacaata 408  Q
    ||||||||||||||||||||||||||||||    
T  14989780 tctcattttattaatagaattcatacaata 14989809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 408
Target Start/End: Complemental strand, 46567878 - 46567849
Alignment:
Q  379 tctcattttattaatagaattcatacaata 408  Q
    ||||||||||||||||||||||||||||||    
T  46567878 tctcattttattaatagaattcatacaata 46567849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 8e-50; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 379 - 495
Target Start/End: Complemental strand, 48567403 - 48567287
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48567403 tctcattttattaatagaattcatacaatataataattgatacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaa 48567304  T
Q  479 aagtaatcaatattctt 495  Q
    ||||||||||| |||||    
T  48567303 aagtaatcaatcttctt 48567287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 379 - 489
Target Start/End: Complemental strand, 46179285 - 46179174
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 477  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||||    
T  46179285 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcattaatttattctacttattttcttcctctttggggtaa 46179186  T
Q  478 aaagtaatcaat 489  Q
    ||||| ||||||    
T  46179185 aaagtgatcaat 46179174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 379 - 479
Target Start/End: Complemental strand, 41872352 - 41872252
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||    
T  41872352 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttatgctacttattttctcccttttgggataaa 41872253  T
Q  479 a 479  Q
    |    
T  41872252 a 41872252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 383 - 482
Target Start/End: Original strand, 3659625 - 3659724
Alignment:
Q  383 attttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaaagt 482  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||  ||||||||||||||||||||||||| ||||||||||||||    
T  3659625 attttattaatagaattcatacaatacaataattgatacaataatttattcgaattcacaaatttattctacttattttctccctcttggggtaaaaagt 3659724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 379 - 489
Target Start/End: Complemental strand, 21483545 - 21483441
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    ||||||||||||||||||||||||||||||     ||| |||||||||||||||| |||||| |||||||||||||||||||||||||| || |||||||    
T  21483545 tctcattttattaatagaattcatacaata-----attgatacaataatttattcgaattcactaatttattctacttattttctccctctt-gggtaaa 21483452  T
Q  479 aagtaatcaat 489  Q
    |||| ||||||    
T  21483451 aagtgatcaat 21483441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 379 - 481
Target Start/End: Complemental strand, 46924414 - 46924316
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||    ||| | |||||||||||||||||| || |||| ||    
T  46924414 tctcattttattaatagaattcatacaatacaataattgatacaataatttattcgaaatc----attaaatctacttattttctccctctttgggttaa 46924319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 481
Target Start/End: Complemental strand, 39223340 - 39223242
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||    | |||||||||||||||||| || |||| ||    
T  39223340 tctcattttattaatagaattcatacaatacaataattgatacaacaatttattcgaaatcacta----aatctacttattttctccctctttgggttaa 39223245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 379 - 481
Target Start/End: Complemental strand, 30308988 - 30308890
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||| ||||||| |||||| ||||||||| || ||| ||    | |||||||||||||||||| || |||| ||    
T  30308988 tctcattttattaatagaattcatacaatataataattgatacaacaatttattcgaaatcacta----aatctacttattttctccctctttgggttaa 30308893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 379 - 418
Target Start/End: Complemental strand, 49597822 - 49597783
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataattta 418  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49597822 tctcattttattaatagaattcatacaatacaataattta 49597783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 39650975 - 39650916
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  39650975 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 39650916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 383 - 440
Target Start/End: Original strand, 18171415 - 18171472
Alignment:
Q  383 attttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    |||||||||| |||||||||||||| |||||||| |||| ||||||||||| ||||||    
T  18171415 attttattaacagaattcatacaattcaataattgatacgataatttattcgaattca 18171472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 489
Target Start/End: Complemental strand, 49597795 - 49597723
Alignment:
Q  418 atacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaaaaagtaatcaat 489  Q
    |||||||||||||  ||  |||| |||||||||||| ||||||||||||| ||||||||||||||| ||||||    
T  49597795 atacaataatttaccccgcttcactaatttattctatttattttctccctctttggggtaaaaagtgatcaat 49597723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 47486176 - 47486117
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||| ||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  47486176 tctcattctattaata--attcatacaatacaataattcttacaataatttattcaaattca 47486117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 440
Target Start/End: Complemental strand, 50066233 - 50066177
Alignment:
Q  382 cattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    |||||||||||||  ||||||||||||||||||||  ||||||||| ||||| ||||||    
T  50066233 cattttattaata--attcatacaatacaataattcttacaataatatattcaaattca 50066177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 408
Target Start/End: Complemental strand, 49594650 - 49594621
Alignment:
Q  379 tctcattttattaatagaattcatacaata 408  Q
    ||||||||||||||||||||||||||||||    
T  49594650 tctcattttattaatagaattcatacaata 49594621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 379 - 479
Target Start/End: Original strand, 29132118 - 29132218
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  29132118 tctcattttattaatagaattcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctccctcttggggtaaa 29132217  T
Q  479 a 479  Q
    |    
T  29132218 a 29132218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 379 - 489
Target Start/End: Original strand, 42121285 - 42121395
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||    
T  42121285 tctcattttattaatagaattcattcaatacaataattgatacaataatttattcgaattcactaatttattctacttattttctccctcttggggtaaa 42121384  T
Q  479 aagtaatcaat 489  Q
    |||| ||||||    
T  42121385 aagtgatcaat 42121395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 380 - 489
Target Start/End: Original strand, 22495383 - 22495492
Alignment:
Q  380 ctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaa 479  Q
    ||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||    
T  22495383 ctcattttattaatagaattcatacaatataataattgatacactaatttattcgaattcactaatttattctacttattttctccctcttggggtaaaa 22495482  T
Q  480 agtaatcaat 489  Q
    ||| ||||||    
T  22495483 agtgatcaat 22495492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 379 - 489
Target Start/End: Original strand, 2154712 - 2154822
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    ||||||||||||||||||||||| |||||||||||||| |||||| ||||||||| |||||| |||||||||||||||||| ||| ||||||||||||||    
T  2154712 tctcattttattaatagaattcaaacaatacaataattgatacaacaatttattcgaattcactaatttattctacttattatcttccttttggggtaaa 2154811  T
Q  479 aagtaatcaat 489  Q
    |||| ||||||    
T  2154812 aagtgatcaat 2154822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 433
Target Start/End: Complemental strand, 8556873 - 8556819
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattc 433  Q
    |||||||||||||||||||||||||||||||||||||| ||| || |||||||||    
T  8556873 tctcattttattaatagaattcatacaatacaataattgataaaacaatttattc 8556819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 12968009 - 12967950
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  12968009 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 12967950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 396 - 440
Target Start/End: Original strand, 18394264 - 18394308
Alignment:
Q  396 aattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||| |||||||  ||||||||||||||| ||||||    
T  18394264 aattcatacaatagaataattcttacaataatttattcaaattca 18394308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 379 - 489
Target Start/End: Original strand, 42385089 - 42385199
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||| ||||| ||||||||||    
T  42385089 tctcattttattaatagaattcatacaatacaataattgatacaataatttattcgaattcactaatttattctacttattttttccctcttggggtaaa 42385188  T
Q  479 aagtaatcaat 489  Q
    |||| ||||||    
T  42385189 aagtgatcaat 42385199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 379 - 482
Target Start/End: Complemental strand, 25575473 - 25575369
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctccct-tttggggtaa 477  Q
    ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||    
T  25575473 tctcattttattaatagaactcatacaatacaataattgatacaataatttattccaattcactaatttattctacttattttctccctctttggggtaa 25575374  T
Q  478 aaagt 482  Q
    |||||    
T  25575373 aaagt 25575369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 383 - 489
Target Start/End: Complemental strand, 42994317 - 42994211
Alignment:
Q  383 attttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaaagt 482  Q
    ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| ||||||||||||||||||||||| || ||||| ||||||||    
T  42994317 attttattaatagaattcatacaatacaatatttgatacaataatttattcgaattcactaatttattctacttattttctctctcttgggttaaaaagt 42994218  T
Q  483 aatcaat 489  Q
     ||||||    
T  42994217 gatcaat 42994211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 383 - 451
Target Start/End: Complemental strand, 36720219 - 36720151
Alignment:
Q  383 attttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattc 451  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||| ||| ||||||    
T  36720219 attttattaatagaattcatacaatagaataattgatacaataatttattcgaattcactaaattattc 36720151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 35486038 - 35485979
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||||||||||||| ||||||    
T  35486038 tctcattttattaata--attcatacaatacaataattcttacaataatttattcaaattca 35485979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 42948151 - 42948092
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||||||   |||||||||||||||||||  ||||||||||||||| ||||||    
T  42948151 tctcattttattaatat--ttcatacaatacaataattcttacaataatttattcaaattca 42948092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 379 - 440
Target Start/End: Complemental strand, 44834216 - 44834157
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||||||  ||||||||||||||||||||  ||||| ||||||||| ||||||    
T  44834216 tctcattttattaata--attcatacaatacaataattcttacaacaatttattcaaattca 44834157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 379 - 410
Target Start/End: Complemental strand, 39415866 - 39415835
Alignment:
Q  379 tctcattttattaatagaattcatacaataca 410  Q
    ||||||||||||||||||||||||||||||||    
T  39415866 tctcattttattaatagaattcatacaataca 39415835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 419
Target Start/End: Original strand, 16932381 - 16932419
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttat 419  Q
    ||||||||||||||||  |||||||||||||||||||||||    
T  16932381 tctcattttattaata--attcatacaatacaataatttat 16932419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 408
Target Start/End: Original strand, 25744542 - 25744571
Alignment:
Q  379 tctcattttattaatagaattcatacaata 408  Q
    ||||||||||||||||||||||||||||||    
T  25744542 tctcattttattaatagaattcatacaata 25744571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 379 - 408
Target Start/End: Original strand, 47559854 - 47559883
Alignment:
Q  379 tctcattttattaatagaattcatacaata 408  Q
    ||||||||||||||||||||||||||||||    
T  47559854 tctcattttattaatagaattcatacaata 47559883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0861 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 379 - 482
Target Start/End: Original strand, 3153 - 3256
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||||||||||| ||| ||||||||| || ||||||||||||||||||||||||||||||||| ||||||| ||    
T  3153 tctcattttattaatagaattcatacaatacaataattgataaaataatttactcgaattcagtaatttattctacttattttctccctcttggggtcaa 3252  T
Q  479 aagt 482  Q
    ||||    
T  3253 aagt 3256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 413 - 495
Target Start/End: Original strand, 34471070 - 34471152
Alignment:
Q  413 aatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaaagtaatcaatattctt 495  Q
    |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34471070 aattgatacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaaaagtaatcaatcttctt 34471152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 418 - 495
Target Start/End: Complemental strand, 28704600 - 28704523
Alignment:
Q  418 atacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaaaagtaatcaatattctt 495  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28704600 atacaataatttattccaattcactaatttattctacttattttctcccttttggggtaaaaagtaatcaatcttctt 28704523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 379 - 489
Target Start/End: Original strand, 23542175 - 23542290
Alignment:
Q  379 tctcattttattaatagaattcatacaata-----caataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggg 473  Q
    ||||||||||||||||||||| ||||||||     |||||||| |||||||||||||||| || ||| |||||||||||||||||||||||||| | |||    
T  23542175 tctcattttattaatagaattaatacaatataatacaataattaatacaataatttattcgaaatcactaatttattctacttattttctccctctcggg 23542274  T
Q  474 gtaaaaagtaatcaat 489  Q
    ||||||||| ||||||    
T  23542275 gtaaaaagtgatcaat 23542290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 379 - 481
Target Start/End: Original strand, 40416331 - 40416429
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttatacaataatttattccaattcagtaatttattctacttattttctcccttttggggtaaa 478  Q
    |||||||||||||||||||||||||||||||||||||| |||||| ||||||||| || ||| ||    | |||||||||||||||||| || |||| ||    
T  40416331 tctcattttattaatagaattcatacaatacaataattgatacaacaatttattcgaaatcacta----aatctacttattttctccctctttgggttaa 40416426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 418 - 474
Target Start/End: Complemental strand, 4640410 - 4640354
Alignment:
Q  418 atacaataatttattccaattcagtaatttattctacttattttctcccttttgggg 474  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  4640410 atacaataatttattccaattcactaatttattctacttattttctccctcttgggg 4640354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 4640437 - 4640397
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttat 419  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4640437 tctcattttattaatagaattcatacaatacaataatttat 4640397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 18755714 - 18755769
Alignment:
Q  96 gttgtgtgacctcgtcggtcagtctcattgtcacacgctaatttgattcatttataa 152  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||    
T  18755714 gttgtgtgacctcgtcg-tcactctcattctcacacgctaatttgattcatttataa 18755769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 379 - 419
Target Start/End: Complemental strand, 28704627 - 28704587
Alignment:
Q  379 tctcattttattaatagaattcatacaatacaataatttat 419  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  28704627 tctcattttattaatagaattcatacaatacaataatttat 28704587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 220 - 274
Target Start/End: Original strand, 18755809 - 18755863
Alignment:
Q  220 gaagcatctacccctctatttacgttcaataactttatgtcaaattaagctctgc 274  Q
    |||||||||||||||||||||||| |||| ||||||||||| |||||||| ||||    
T  18755809 gaagcatctacccctctatttacgatcaacaactttatgtccaattaagccctgc 18755863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 43635894 - 43635839
Alignment:
Q  383 attttattaatagaattcatacaatacaataatttatacaataatttattccaattca 440  Q
    ||||||||||||  ||||||||||||||||||||  |||||||||||| || ||||||    
T  43635894 attttattaata--attcatacaatacaataattcttacaataatttagtcaaattca 43635839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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