View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19399_low_14 (Length: 479)

Name: NF19399_low_14
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19399_low_14
NF19399_low_14
[»] chr2 (2 HSPs)
chr2 (19-465)||(31469331-31469784)
chr2 (384-438)||(15570079-15570133)
[»] chr7 (5 HSPs)
chr7 (383-465)||(15736778-15736860)
chr7 (383-438)||(12962670-12962725)
chr7 (397-427)||(26336619-26336649)
chr7 (397-438)||(13931843-13931884)
chr7 (392-436)||(44215174-44215218)
[»] chr6 (3 HSPs)
chr6 (383-465)||(1579515-1579597)
chr6 (401-438)||(34968936-34968973)
chr6 (397-442)||(35173840-35173885)
[»] chr3 (3 HSPs)
chr3 (383-440)||(11765210-11765267)
chr3 (397-442)||(51859016-51859061)
chr3 (397-427)||(11758869-11758899)
[»] chr5 (1 HSPs)
chr5 (384-465)||(11233279-11233360)
[»] chr4 (4 HSPs)
chr4 (383-442)||(26885844-26885903)
chr4 (397-438)||(13744134-13744175)
chr4 (409-438)||(47326260-47326289)
chr4 (409-438)||(47341056-47341085)
[»] chr8 (2 HSPs)
chr8 (383-438)||(34909097-34909152)
chr8 (397-438)||(32057278-32057319)


Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 465
Target Start/End: Complemental strand, 31469784 - 31469331
Alignment:
Q  19 ttaagagttgctctgctaagggtatccctagggccaactgcaatggaaacctctgttgctgcggaatatagcatagcacgtataagtctttgtacaagtt 118  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  31469784 ttaagagttgctctgataagggtatccctagggccaactgcaatggaaacctctgttgctgcggaatatagcatagcatgtataagtctttgtacaagtt 31469685  T
Q  119 aa------------aaataaatatacattaattttcgtttttgttttcacatgcattatccaagcatctatttaaaattatttatttatcatgtctctct 206  Q
    ||            ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  31469684 aatgtacaagttaaaaataaatatacattgattttcgtttttgttttcacatgcattatccaaacatctatttaaaattatttatttatcatctctctct 31469585  T
Q  207 caaaaacagaaagnnnnnnnntactacacaaaaatgattttagacaacnnnnnnnnagacaccgctttttaagtcgtgtgtatttcctacacggttaaac 306  Q
    ||||||||||||         |||||||||||  ||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||    
T  31469584 caaaaacagaaa---aaaaaatactacacaaa--tgattttagacaacttttttttagacaccgctttttaagtcgtgtgtatttcctacacggttaaac 31469490  T
Q  307 acttttagacaatgnnnnnnngaagcgtaaaagcaatgttatattaccaaaacttatcaaaatatatcattgtaacgggtggggcttacaatgcacaagg 406  Q
    ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  31469489 acttttagacaatgtttttttgaagcgtaaaagcaatgttatattaccaaaacttatcaaaatatatcattgtaacgggtggggtttacaatgcacaagg 31469390  T
Q  407 aaaagatttgtgcaccatgcaaaagttgtgcaaattgatgctgacattcattttcggcc 465  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31469389 aaaagatttgtgcaccatgcaaaagttgtgcaaattgatgctgacattcattttcggcc 31469331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 438
Target Start/End: Original strand, 15570079 - 15570133
Alignment:
Q  384 ggtggggcttacaatgcacaaggaaaagatttgtgcaccatgcaaaagttgtgca 438  Q
    ||||||| |||  |||||||||| |||||||||||||||||||| ||||||||||    
T  15570079 ggtggggtttagcatgcacaagggaaagatttgtgcaccatgcataagttgtgca 15570133  T

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Target: chr7 (Bit Score: 51; Significance: 5e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 383 - 465
Target Start/End: Original strand, 15736778 - 15736860
Alignment:
Q  383 gggtggggcttacaatgcacaaggaaaagatttgtgcaccatgcaaaagttgtgcaaattgatgctgacattcattttcggcc 465  Q
    |||||||| |||  |||||||||| |||||||||||| ||||||| ||||||||||||||  |||||||||||||||||||||    
T  15736778 gggtggggtttagcatgcacaagggaaagatttgtgctccatgcacaagttgtgcaaattagtgctgacattcattttcggcc 15736860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 12962725 - 12962670
Alignment:
Q  383 gggtggggcttacaatgcacaaggaaaagatttgtgcaccatgcaaaagttgtgca 438  Q
    |||||||| |||  ||||| ||||||||||||||||||||||||||||||||||||    
T  12962725 gggtggggtttagcatgcataaggaaaagatttgtgcaccatgcaaaagttgtgca 12962670  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Complemental strand, 26336649 - 26336619
Alignment:
Q  397 atgcacaaggaaaagatttgtgcaccatgca 427  Q
    |||||||||||||||||||||||||||||||    
T  26336649 atgcacaaggaaaagatttgtgcaccatgca 26336619  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Complemental strand, 13931884 - 13931843
Alignment:
Q  397 atgcacaaggaaaagatttgtgcaccatgcaaaagttgtgca 438  Q
    |||||||||| |||||||||||||||||||| || |||||||    
T  13931884 atgcacaagggaaagatttgtgcaccatgcacaacttgtgca 13931843  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 436
Target Start/End: Complemental strand, 44215218 - 44215174
Alignment:
Q  392 ttacaatgcacaaggaaaagatttgtgcaccatgcaaaagttgtg 436  Q
    |||| |||||||||||||| |||||| |||||| |||||||||||    
T  44215218 ttacgatgcacaaggaaaaaatttgtacaccatacaaaagttgtg 44215174  T

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Target: chr6 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 383 - 465
Target Start/End: Complemental strand, 1579597 - 1579515
Alignment:
Q  383 gggtggggcttacaatgcacaaggaaaagatttgtgcaccatgcaaaagttgtgcaaattgatgctgacattcattttcggcc 465  Q
    |||||||| |||  |||||||||| |||||||||||| ||||||| ||||||||||||||  |||||||||||||||||||||    
T  1579597 gggtggggtttagcatgcacaagggaaagatttgtgctccatgcacaagttgtgcaaattagtgctgacattcattttcggcc 1579515  T

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Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 401 - 438
Target Start/End: Complemental strand, 34968973 - 34968936
Alignment:
Q  401 acaaggaaaagatttgtgcaccatgcaaaagttgtgca 438  Q
    ||||||||||||||||||||||||||||||||||||||    
T  34968973 acaaggaaaagatttgtgcaccatgcaaaagttgtgca 34968936  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 442
Target Start/End: Original strand, 35173840 - 35173885
Alignment:
Q  397 atgcacaaggaaaagatttgtgcaccatgcaaaagttgtgcaaatt 442  Q
    ||||| ||||||||||||||||| ||||||| | ||||||||||||    
T  35173840 atgcataaggaaaagatttgtgctccatgcacaggttgtgcaaatt 35173885  T

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Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 383 - 440
Target Start/End: Complemental strand, 11765267 - 11765210
Alignment:
Q  383 gggtggggcttacaatgcacaaggaaaagatttgtgcaccatgcaaaagttgtgcaaa 440  Q
    |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||    
T  11765267 gggtggggtttacaatgcatacggaaaagatttgtgcaccatgcaaaagttgtgcaaa 11765210  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 442
Target Start/End: Complemental strand, 51859061 - 51859016
Alignment:
Q  397 atgcacaaggaaaagatttgtgcaccatgcaaaagttgtgcaaatt 442  Q
    |||||||||| |||||||||||||||||||| ||||||||||||||    
T  51859061 atgcacaagggaaagatttgtgcaccatgcacaagttgtgcaaatt 51859016  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 427
Target Start/End: Original strand, 11758869 - 11758899
Alignment:
Q  397 atgcacaaggaaaagatttgtgcaccatgca 427  Q
    |||||||||||||||||||||||||||||||    
T  11758869 atgcacaaggaaaagatttgtgcaccatgca 11758899  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 384 - 465
Target Start/End: Original strand, 11233279 - 11233360
Alignment:
Q  384 ggtggggcttacaatgcacaaggaaaagatttgtgcaccatgcaaaagttgtgcaaattgatgctgacattcattttcggcc 465  Q
    ||||||| |||  |||||||||| |||||||||||| || |||| || |||||||||||  |||||||||||||||||||||    
T  11233279 ggtggggtttagcatgcacaagggaaagatttgtgctccgtgcacaaattgtgcaaattagtgctgacattcattttcggcc 11233360  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 383 - 442
Target Start/End: Original strand, 26885844 - 26885903
Alignment:
Q  383 gggtggggcttacaatgcacaaggaaaagatttgtgcaccatgcaaaagttgtgcaaatt 442  Q
    |||||||| |||  |||||||||| |||||||||||||||||||| ||||||||||||||    
T  26885844 gggtggggtttagcatgcacaagggaaagatttgtgcaccatgcacaagttgtgcaaatt 26885903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Complemental strand, 13744175 - 13744134
Alignment:
Q  397 atgcacaaggaaaagatttgtgcaccatgcaaaagttgtgca 438  Q
    |||| ||||| |||||||||||||||||||| ||||||||||    
T  13744175 atgctcaagggaaagatttgtgcaccatgcataagttgtgca 13744134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 438
Target Start/End: Complemental strand, 47326289 - 47326260
Alignment:
Q  409 aagatttgtgcaccatgcaaaagttgtgca 438  Q
    ||||||||||||||||||||||||||||||    
T  47326289 aagatttgtgcaccatgcaaaagttgtgca 47326260  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 438
Target Start/End: Complemental strand, 47341085 - 47341056
Alignment:
Q  409 aagatttgtgcaccatgcaaaagttgtgca 438  Q
    ||||||||||||||||||||||||||||||    
T  47341085 aagatttgtgcaccatgcaaaagttgtgca 47341056  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 383 - 438
Target Start/End: Complemental strand, 34909152 - 34909097
Alignment:
Q  383 gggtggggcttacaatgcacaaggaaaagatttgtgcaccatgcaaaagttgtgca 438  Q
    |||||||| |||  |||||||||| |||||||||||||||||||| ||||||||||    
T  34909152 gggtggggtttagcatgcacaagggaaagatttgtgcaccatgcacaagttgtgca 34909097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 397 - 438
Target Start/End: Original strand, 32057278 - 32057319
Alignment:
Q  397 atgcacaaggaaaagatttgtgcaccatgcaaaagttgtgca 438  Q
    |||||||||| |||||||||||||||||||| || |||||||    
T  32057278 atgcacaagggaaagatttgtgcaccatgcacaacttgtgca 32057319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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