View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_low_15 (Length: 473)
Name: NF19399_low_15
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 4 - 451
Target Start/End: Complemental strand, 6127572 - 6127124
Alignment:
| Q |
4 |
tggtgtttgtgttcatatcagcgcttcatagattgttatggacataattcttgttttttcttcctttgattcagtttttattgtgtcagcttatatattt |
103 |
Q |
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| T |
6127572 |
tggtgtttgtgttcgtgtcagcgcttcatagattgttacggacataattcttgttttttcttcctttgattcagtttttattgtgtcagcttatattttt |
6127473 |
T |
|
| Q |
104 |
tttctccaataaaataagaaaattaatgttagcttatgttatgggattgttgttttaagacgaccctgttgccgctaatactgatactactattattgta |
203 |
Q |
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| T |
6127472 |
tttctccaataaaataagaaaattaaggttagcttatgttatgggattgttgttttaagacgaccctgttgccgctaatactgatactactattattgta |
6127373 |
T |
|
| Q |
204 |
atcttctgcaggattcttccgt-gttgttctctatggttttttggaactactaaaataggcgtcattgcaagaagttcggttcattgtattgaacattgt |
302 |
Q |
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| T |
6127372 |
atcttctgcaggattcttccgttgttgttctctatggttttccggaactactaaaataggcgtcattgcaagaagttcggttcattgtattgaacattgt |
6127273 |
T |
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| Q |
303 |
taaaatattggcgatggtctctgataagcagcctgcgggccttcttgatacactcaaaatggagagggttagaactattctgacccatacttatccttac |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
6127272 |
taaaatattggcgatggtctctgataagcagcctgcgggccttcttgatacactcaaaatggagagggtcagaactattctgacccatacttatccttac |
6127173 |
T |
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| Q |
403 |
cctcacgaacattcccgccatgctgtaattgctgttgtcgttggttgcc |
451 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6127172 |
cctcacgaacattcccgccatgctgtaattgctgttgtcgttggttgcc |
6127124 |
T |
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