View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19399_low_16 (Length: 463)
Name: NF19399_low_16
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_16 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 9023499 - 9023071
Alignment:
| Q |
19 |
atgactgaaaggtttgacnnnnnnnttgttgaagaaaggtaatagcctttttctatatattcttttttaattatctcatcatgtatcacattgttatttg |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9023499 |
atgactgaaaggtttgacaaaaaaattgttgaagaaaggtaatagcctttttctatatattcttttttaattatctcatcatgtatcacattgtgatttg |
9023400 |
T |
|
| Q |
119 |
attcttttggggtcttggctgtttttcaaaaaagatacatagatgataagacttattattctaaagctaaactcctttcaattagaattattgaatctgc |
218 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9023399 |
attcttttggggccttggctgtttttcaaaaaagatacataaatgataagacttattattctaaagctaaactcctttcaattagaattattgaatctgc |
9023300 |
T |
|
| Q |
219 |
acttttgttttgatttagatgtcacaccttgtttgtacatttcatcttgtccctacactcgccaaccgtgattagttcattaagttaattaatttatctt |
318 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9023299 |
acttttgttttgatttagatgtcacaccttgtttgtacatttcatcttgtccctacactcgccaaccgtgattagttcattaatttaattaatttatctt |
9023200 |
T |
|
| Q |
319 |
tgtaaaaaagaagttaattaatttaacatgtgaattatgctaattcgaaatagagcaatcttcacttgacaacaaaacaaatcataaattgttagttgaa |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9023199 |
tgtaaaaaagaagttaattaatttaacatgtgaattatgctaattcgaaatagagcaatcttcacttgacaacaaaacaaatcataaattgttagttgaa |
9023100 |
T |
|
| Q |
419 |
gaatacaaaagaaccatatacatgttaac |
447 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
9023099 |
gaatacaaaagaaccatatacatgttaac |
9023071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University