View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19399_low_20 (Length: 425)
Name: NF19399_low_20
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 351; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 1 - 410
Target Start/End: Original strand, 36808915 - 36809316
Alignment:
| Q |
1 |
tgattactgagtatacaacacttggattaatatttcaggatatgattgagtattttttggttggtcattggtgtacacttaaactttgggatgttcctag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
36808915 |
tgattaccgagtatacaacacttggattaatatttcaggatatgattgagtattttttggttggtcattggtgtac--ttaaactttgggatgttcctag |
36809012 |
T |
|
| Q |
101 |
tatagcttgttttagctcttgaactgatgtatgttgtttgtcttagactcttagctctagctggtgtgatgtgcatatatggagagttactttaccgaac |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
36809013 |
ta--gcttgttttagctcttgaactgatgtatgttgtttgtcttagactcttagctctagctggtgtgatgtgcatatatggagagttactttacccaac |
36809110 |
T |
|
| Q |
201 |
tctttatcattaagagttgtagtattcattatgattctaacacttattttaaagaaaatagaaacatctgaattgatgagtgaatcaagtgtcatttgtg |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36809111 |
tttttatcattaagagttgtagtattcattatgattctaacacttattttaaagaaaatagaaacatctgaattgatgagtgaatcaagtgtcatttgtg |
36809210 |
T |
|
| Q |
301 |
gtggaaaatcataatgacgtacgtatggttgtgtcatactatcacattgatattgttattggagttgttttagaaagtttaaacacattgaaattaatat |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
36809211 |
gtggaaaatcataatg----acgtatggttgtgtcatactatcacattgatattgttattggagtttttttagaaagtttagacacattgaaattaatat |
36809306 |
T |
|
| Q |
401 |
aattgagtat |
410 |
Q |
| |
|
|||||||||| |
|
|
| T |
36809307 |
aattgagtat |
36809316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 53 - 153
Target Start/End: Complemental strand, 36509831 - 36509735
Alignment:
| Q |
53 |
ttttttggttggtcattggtgtacacttaaactttgggatgttcctagtatagcttgttttagctcttgaactgatgtatgttgtttgtcttagactctt |
152 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| ||||||| |||| |||||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
36509831 |
ttttttggtttgccattggtgtacacttaaacttttggatgtt-ctag--tagcttgttttagctctt-aactaatgtatgttgtttgtcttagactctt |
36509736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University