View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_low_21 (Length: 407)
Name: NF19399_low_21
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 20 - 102
Target Start/End: Original strand, 15994984 - 15995066
Alignment:
| Q |
20 |
ataaacaaagaaacttcaattatgtatgtaacgggaacaatagatgttggaagtagataaatcaagtagcaagtagaagaatt |
102 |
Q |
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| T |
15994984 |
ataaacaaagaaacttcaattatgtatgcaacaggaacaatagatgttggaagtagataaataaagtagcaagtagaagaatt |
15995066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 15995203 - 15995256
Alignment:
| Q |
114 |
ttatatgttaagtatggagacatacaaataatgcattcttgtattatgctaaaa |
167 |
Q |
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| T |
15995203 |
ttatatgttaagtatggaggcctacaaataatgcattcttgtattatgctaaaa |
15995256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 20914995 - 20915052
Alignment:
| Q |
334 |
aaatgcaagtgtgagaaaagatagcggaaaaacggtgtggaagtatgagggaaaatga |
391 |
Q |
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| T |
20914995 |
aaatgcaagtgtgagaaaagatagcggaaaaacggtgtggaaggatgagggaaaatga |
20915052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 38951098 - 38951151
Alignment:
| Q |
114 |
ttatatgttaagtatggagacatacaaataatgcattcttgtattatgctaaaa |
167 |
Q |
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| T |
38951098 |
ttatatgttaagtatggaggcctacaaataatgcattcttgtattatggtaaaa |
38951151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 38950912 - 38950961
Alignment:
| Q |
53 |
ggaacaatagatgttggaagtagataaatcaagtagcaagtagaagaatt |
102 |
Q |
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|||||||| |||||||||||||||||||| |||||| ||||||||||||| |
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| T |
38950912 |
ggaacaatcgatgttggaagtagataaataaagtagtaagtagaagaatt |
38950961 |
T |
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