View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_low_25 (Length: 347)
Name: NF19399_low_25
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 16 - 297
Target Start/End: Complemental strand, 25871289 - 25871008
Alignment:
| Q |
16 |
atgggtgatcatgttgttgactatttggtttgcctgaatgagatatcttgtttataattcaactgttgagtcattcacccaacnnnnnnnnnnnnnnnnn |
115 |
Q |
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| T |
25871289 |
atgggtgatcgtgttgttgactatt-ggtttgcctgaatgagatatattgtttataattcaactgttgagtcattcacccaacaaaaataaaaataaaaa |
25871191 |
T |
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| Q |
116 |
nttcacctaaaatttcaactgttgagtgagatccatttacagaaggacattctcaaaaagtgttgtattg-ttttgtataaatgaagcaaaagcattcca |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
25871190 |
attcacctaaaatttcaactgttgagtgagatccatttacagaaggacattctcaaaaagtgttgtattgtttttgtataaatgaagcaaaagcattcca |
25871091 |
T |
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| Q |
215 |
tggaagnnnnnnnnnctccaaaaatgaattcaaaataaatactcagcaaataatctaacattggtcctgcatataacacaagt |
297 |
Q |
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| T |
25871090 |
tggaagaaaaaaaaactccaaaaatgaattcaaaataaatactcagcaaataatctaacattggtcctgcatataatacaagt |
25871008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 44 - 333
Target Start/End: Complemental strand, 43381754 - 43381457
Alignment:
| Q |
44 |
tttgcctgaatgagatatcttgtttataattcaactgttgagtcattcacccaacnnnnnnnnnnnnnnnnnnttcacctaaaatttcaactgttgagtg |
143 |
Q |
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| T |
43381754 |
tttgcctgaatgagacatcttgtttataattcaactgttgagtcattcacccaacaaaaataaaaataaaaaattcacctaaattttcaactgttgagtg |
43381655 |
T |
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| Q |
144 |
agatccatttacagaaggacattctcaaaaagtgttgtattgttttgtataaatgaagcaaaagcattccatggaagnnnnnnnnnctccaaaaatgaat |
243 |
Q |
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| T |
43381654 |
agatccatttacagaaggacattctcaaaaagtgttgtattgttttgtataaatgaagcaaaagcattccatggaa-aaaaaaaaactccaaaaatgaat |
43381556 |
T |
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| Q |
244 |
tcaaaataaatactcagcaaataatctaacattggtcctgcatataacacaag---------ttatagaatagaataaaaaagaatgacgttggatttt |
333 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
43381555 |
tcaaaataaatactcagcaaataatctaacattggtcctgcatataacacaagtgatttatcttatagaatagaataaaaaagaatgacgttggatttt |
43381457 |
T |
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