View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19399_low_26 (Length: 345)

Name: NF19399_low_26
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19399_low_26
NF19399_low_26
[»] chr6 (2 HSPs)
chr6 (174-327)||(34787315-34787468)
chr6 (1-108)||(34787142-34787249)
[»] chr5 (1 HSPs)
chr5 (279-327)||(2293729-2293777)
[»] chr2 (1 HSPs)
chr2 (4-60)||(40606933-40606989)
[»] chr8 (2 HSPs)
chr8 (8-63)||(3810689-3810744)
chr8 (4-63)||(40041307-40041367)
[»] chr7 (2 HSPs)
chr7 (4-59)||(26502573-26502628)
chr7 (4-59)||(26590086-26590141)
[»] chr4 (1 HSPs)
chr4 (8-63)||(44253881-44253936)
[»] chr3 (2 HSPs)
chr3 (4-59)||(33573585-33573640)
chr3 (5-59)||(33461231-33461285)


Alignment Details
Target: chr6 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 174 - 327
Target Start/End: Original strand, 34787315 - 34787468
Alignment:
Q  174 agccgaaaagcccgtgaagaaacctatttaaataagaaagatttacacactcaacagaaacaaaaacacattcttcctctttctctatcgttagggtttt 273  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34787315 agccgaaaagcccgtgaagaaacctatttaaataagaaagatttacacactcaacagaaacaaaaacacattcttcctctttctctatcgttagggtttt 34787414  T
Q  274 ccaagccctagccatgtcttcttccaaagttgcagacccaaccctaggttacct 327  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34787415 ccaagccctagccatgtcttcttccaaagttgcagacccaaccctaggttacct 34787468  T

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Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 34787142 - 34787249
Alignment:
Q  1 acagtagtttgtgtcaaatgttggaatgaaggtataaatataggggtgtaggatataacttccgtaggaaagatatgtaagattaaagttttaaacaaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34787142 acagtagtttgtgtcaaatgttggaatgaaggtataaatgtaggggtgtaggatataacttccgtaagaaagatatgtaagattaaagttttaaacaaaa 34787241  T
Q  101 gggaattg 108  Q
    ||||||||    
T  34787242 gggaattg 34787249  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 279 - 327
Target Start/End: Complemental strand, 2293777 - 2293729
Alignment:
Q  279 ccctagccatgtcttcttccaaagttgcagacccaaccctaggttacct 327  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  2293777 ccctagccatgtcttcttccaaagatgcagacccaaccctaggttacct 2293729  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 60
Target Start/End: Original strand, 40606933 - 40606989
Alignment:
Q  4 gtagtttgtgtcaaatgttggaatgaaggtataaatataggggtgtaggatataact 60  Q
    |||||||||||||||||||||  |||||||||||||  |||||||| || |||||||    
T  40606933 gtagtttgtgtcaaatgttggggtgaaggtataaatgcaggggtgtggggtataact 40606989  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 3810744 - 3810689
Alignment:
Q  8 tttgtgtcaaatgttggaatgaaggtataaatataggggtgtaggatataacttcc 63  Q
    |||||||||||||||||  | ||||||||||| ||||||||| || ||||||||||    
T  3810744 tttgtgtcaaatgttggggtcaaggtataaatgtaggggtgtggggtataacttcc 3810689  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 4 - 63
Target Start/End: Original strand, 40041307 - 40041367
Alignment:
Q  4 gtagtttgtgtcaaatgttggaatgaaggtataaatat-aggggtgtaggatataacttcc 63  Q
    ||||||||||| ||||||||| ||||| |||||||| |  ||||||| |||||||||||||    
T  40041307 gtagtttgtgttaaatgttgggatgaacgtataaatgtcgggggtgtgggatataacttcc 40041367  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 26502628 - 26502573
Alignment:
Q  4 gtagtttgtgtcaaatgttggaatgaaggtataaatataggggtgtaggatataac 59  Q
    |||||||||||||||||||||  | ||||||||||| ||||||||| || ||||||    
T  26502628 gtagtttgtgtcaaatgttggggtaaaggtataaatgtaggggtgtggggtataac 26502573  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 26590086 - 26590141
Alignment:
Q  4 gtagtttgtgtcaaatgttggaatgaaggtataaatataggggtgtaggatataac 59  Q
    |||||||||||||||||||||  | ||||||||||| ||||||||| || ||||||    
T  26590086 gtagtttgtgtcaaatgttggggtaaaggtataaatgtaggggtgtggggtataac 26590141  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 8 - 63
Target Start/End: Complemental strand, 44253936 - 44253881
Alignment:
Q  8 tttgtgtcaaatgttggaatgaaggtataaatataggggtgtaggatataacttcc 63  Q
    ||||||| |||||||||  |||||||||||||||| |||||| || ||||||||||    
T  44253936 tttgtgttaaatgttggggtgaaggtataaatatatgggtgtggggtataacttcc 44253881  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 33573640 - 33573585
Alignment:
Q  4 gtagtttgtgtcaaatgttggaatgaaggtataaatataggggtgtaggatataac 59  Q
    ||||||||||| |||||||||  | ||||||||||| |||||||||||| ||||||    
T  33573640 gtagtttgtgttaaatgttggggtaaaggtataaatgtaggggtgtagggtataac 33573585  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 33461285 - 33461231
Alignment:
Q  5 tagtttgtgtcaaatgttggaatgaaggtataaatataggggtgtaggatataac 59  Q
    ||||||||||||||||||||  | ||||||||||| ||||||||| || ||||||    
T  33461285 tagtttgtgtcaaatgttggggtaaaggtataaatgtaggggtgtggggtataac 33461231  T

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