View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_low_29 (Length: 261)
Name: NF19399_low_29
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_29 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 6e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 82 - 245
Target Start/End: Original strand, 5814070 - 5814233
Alignment:
| Q |
82 |
ttagagagttaaagttggaatatgttctgtttcttatggagttacataaggccaacatatatttgacagtggctttaggagctaaccaaagactactctt |
181 |
Q |
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| T |
5814070 |
ttagagagttaaagttggaatatgttctgtttcttatggagttacataaggccaacatatttttgacagtggctttaggagctaaccaaagactactctt |
5814169 |
T |
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| Q |
182 |
ctagaaaagtgatttatataaacaatttgaaatcaaataataaaactaaagtttatgatttgag |
245 |
Q |
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| T |
5814170 |
ctagaaaagtgatttatataaacaattcgaaatcaaataataaaactaaagtttatgatttgag |
5814233 |
T |
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Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 5812988 - 5813062
Alignment:
| Q |
12 |
tgaaatctagcctaagccaaatacaaccaattggaacaaaaagattaagtattggtgttcaagttgttagttaga |
86 |
Q |
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| T |
5812988 |
tgaaatctagcctaatccaaatacaaccaattggaacaaaaagatgaagtattggtgttcaagttgttagttaga |
5813062 |
T |
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