View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_low_3 (Length: 578)
Name: NF19399_low_3
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 500; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 500; E-Value: 0
Query Start/End: Original strand, 12 - 560
Target Start/End: Complemental strand, 8203099 - 8202547
Alignment:
| Q |
12 |
ccaagaatataaacttatagataataaaatacagtcatattttgtttttcagaccacacttcttgcaaataaaacatcataagctagcttgctaattctc |
111 |
Q |
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| T |
8203099 |
ccaacaatataaacttatagataataaaatacagtcatattttgtttttcagaccacacttcttgcaaataaaacatcataagctagcttgctaattctc |
8203000 |
T |
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| Q |
112 |
tacctagatggagagtttggaaccaacttttggtttaatacgagattacaaactaattaaagcttaaataacaacttaacaagtgctagct----gctta |
207 |
Q |
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| T |
8202999 |
tacctagatggagagtatggaaccaactttaggtttaatgtgatattacaaactaattaaagctcaaataacaacttaacaagtgctagctagctgctta |
8202900 |
T |
|
| Q |
208 |
attaatttacaatgtctaattcaagcaaatttaacatgacattggttccattaattcagctgctcaaccaaggcgcaaatcgtcatttttgtaaccttct |
307 |
Q |
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| T |
8202899 |
attaatttacaatgtctaattcaagcaaatttaacatgacattggttccattaattcagttgctcaaccaaggcgcaaatcgtcatttttgtaaccttct |
8202800 |
T |
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| Q |
308 |
tctccatggtgatgaggaagattcagatgagaatggtgctgacagaatgcatacagagtggaagcaccattggccaatgcaaccgctgattcctcgtctc |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8202799 |
tctccatggtgatgaggaagattcagatgagaatggtgctgacagaatgcatacagagtggaagcaccattggccaatgcaactgctgattcctcgtctc |
8202700 |
T |
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| Q |
408 |
cttcgtcgtggaaaagaaattgtggatggatcacacatttttccttcttattgttattccattcacgcaataaaaggaaacaaaatcatttcctcttctc |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8202699 |
cttcgtcgtggaaaagaaattgtggatggatcacacatttttccttcttattgttattccattcacgcaataaaaggaaacaaaatcatttcctcttctc |
8202600 |
T |
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| Q |
508 |
tatatgtaaatcatttacaatcacaacaaaatgcagttttctatctttttact |
560 |
Q |
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| T |
8202599 |
tatatgtaaatcatttacaatcacaacaaaatgcagttttctatctttttact |
8202547 |
T |
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