View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_low_30 (Length: 259)
Name: NF19399_low_30
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 6 - 243
Target Start/End: Original strand, 44476933 - 44477179
Alignment:
| Q |
6 |
tgagatgaaggattatgctgttnnnnnnnncatggctgctaacatatttgttgagcatgatgtagatgaagaaagtcggttagtagacattccaaactgt |
105 |
Q |
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| T |
44476933 |
tgagattaaggattatgctgttaaaaaaaacagggctgctaacatatttgttgagcatgatgtagatgaagaaagtcagttagtagacattccaaactgt |
44477032 |
T |
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| Q |
106 |
gtgattaatagtcaagtaggtgaaagctcaaagtgtgtcaagggtaa---------tgaaagttcagaagccaatagatacattgagaaaggaaaggcag |
196 |
Q |
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| T |
44477033 |
gtgattagtagtcaagtaggtgaaagatcaaaatgtgtcaagggtaatgaattagttgaaagttcagaagccaataggtacattgagaaaggaaaggcag |
44477132 |
T |
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| Q |
197 |
ttatggtatgtcatgatgaagacaatgtggatgagggtggttcaggt |
243 |
Q |
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| T |
44477133 |
ttatggtatgtcctgatgaagacaatgtggatgagggtggttcaggt |
44477179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 42 - 243
Target Start/End: Complemental strand, 21977196 - 21976999
Alignment:
| Q |
42 |
tgctaacatatttgttgagcatgatgtagatgaagaaagtcggttagtagacattccaaactgtgtgattaatagtcaagtaggtgaaagctcaaagtgt |
141 |
Q |
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| T |
21977196 |
tgctaacatatttgttgagcatgatgtagatgaagtaagtcagttagtagacattccaaactgtgtga-------------aggtgaaagttcaaattgt |
21977110 |
T |
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| Q |
142 |
gtcaagggtaatgaa---------agttcagaagccaatagatacattgagaaaggaaaggcagttatggtatgtcatgatgaagacaatgtggatgagg |
232 |
Q |
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| T |
21977109 |
gtcaagggtaatgaattagttgaaagttcagcagccaataggtacattgagaaaggaaaggcagttatggtatgtcctgatgaagacaatgtggatgagg |
21977010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 104; Significance: 6e-52; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 45 - 243
Target Start/End: Original strand, 852620 - 852827
Alignment:
| Q |
45 |
taacatatttgttgagcatgatgtagatgaagaaagtcggttagtagacattccaaactgtgtgattaatagtcaagtaggtgaaagctcaaagtgtgtc |
144 |
Q |
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| T |
852620 |
taacctatttgttaagcatgatgtagatgaagtaagtgggttagtggacattccaaattgtgtgattagtagtcaagtagatgaaagctcaaattgtgtc |
852719 |
T |
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| Q |
145 |
aagggtaa---------tgaaagttcagaagccaatagatacattgagaaaggaaaggcagttatggtatgtcatgatgaagacaatgtggatgagggtg |
235 |
Q |
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| T |
852720 |
aatggtaattatttaatttaaagttcacaagccaatatgtacattgagaaaggaaaggcagttatggtatgtcctgatgaagataatgtggaaaagggtg |
852819 |
T |
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| Q |
236 |
gttcaggt |
243 |
Q |
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| T |
852820 |
gttcaggt |
852827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 23205577 - 23205506
Alignment:
| Q |
53 |
ttgttgagcatgatgtagatgaagaaagtcggttagtagacattccaaactgtgtgattaatagtcaagtag |
124 |
Q |
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| T |
23205577 |
ttgttgagcatgatgtagatgaagtaattcggttagtagacattccaaactgtgtgattagtagtcaagtag |
23205506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 23677181 - 23677110
Alignment:
| Q |
53 |
ttgttgagcatgatgtagatgaagaaagtcggttagtagacattccaaactgtgtgattaatagtcaagtag |
124 |
Q |
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| T |
23677181 |
ttgttgagcatgatgtagatgaagtaattcggttagtagacattccaaactgtgtgattagtagtcaagtag |
23677110 |
T |
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