View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_low_32 (Length: 257)
Name: NF19399_low_32
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 3452922 - 3453165
Alignment:
| Q |
1 |
tctgaactgcgcgtatggcttccactccattattcacgacatccatgctatatcctagctgcttcatcattgactttgtcaccatgatattaatcttgtt |
100 |
Q |
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| T |
3452922 |
tctgaactgcgcgtatggcttccactccattattcacgacatccatgctatatcctagctgcttcatcattgactttgtcaccatgatattaatcttgtt |
3453021 |
T |
|
| Q |
101 |
atcttcaacaagaagaatattcggctttaacgtcgatttggttacttctgatgatgtgctattgctagtagtactatcttccttcccttgaccctgacat |
200 |
Q |
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| T |
3453022 |
atcttcaacaagaagaatattcggctttaacgtcgatttggttacttctgatgatgtgctattgctagtagtactatcttccttcccttgaccctgacat |
3453121 |
T |
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| Q |
201 |
gtttgttgtggttcatttgactttgtttctaaattcatttctct |
244 |
Q |
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| T |
3453122 |
gtttgttgtggttcatttgactttgtttctaaattcatttctct |
3453165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 48697809 - 48697682
Alignment:
| Q |
25 |
ctccattattcacgacatccatgctatatcctagctgcttcatcattgactttgtcaccatgatattaatcttgttatcttcaacaagaagaatattcgg |
124 |
Q |
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|||||||||| || ||||| ||| ||| || | ||| |||||||| || | |||||||||||| |||||||||||||||||||||||||| || || || |
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| T |
48697809 |
ctccattattgacaacatctatgttatgacccaactgtttcatcatggattgtgtcaccatgatgttaatcttgttatcttcaacaagaaggatcttagg |
48697710 |
T |
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| Q |
125 |
ctttaacgtcgatttggttacttctgat |
152 |
Q |
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|||| | | |||||||||||||||||| |
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| T |
48697709 |
ctttgatatggatttggttacttctgat |
48697682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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