View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_low_39 (Length: 250)
Name: NF19399_low_39
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_39 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 34 - 240
Target Start/End: Original strand, 44194101 - 44194307
Alignment:
| Q |
34 |
aaaaaacctttatcaggaccatatgatgcttaagagccaaacaggaaaatgacgcaagagttcaattttctagcgaactccattgaagggaaatcaagat |
133 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||| |||| |
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| T |
44194101 |
aaaaaacctttatcaggaccatatgatgcttaagagccaaacaggaaaatgacacaagagttcaattttctagcgaaccccattgaagagaaatctagat |
44194200 |
T |
|
| Q |
134 |
tattggatcaccatttccaaagcatcaccatcgctatgatttgctaaaaatatgttaattatcctaaattagaatttccgttactttaaaacaccccaac |
233 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |
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| T |
44194201 |
tattggatcaccatttccaaagcatcaccatcgctatgatttgctaaaaatatgttaattatcctaaattagaattttcgttactataaaacactccaac |
44194300 |
T |
|
| Q |
234 |
acctatg |
240 |
Q |
| |
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||||||| |
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|
| T |
44194301 |
acctatg |
44194307 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 37 - 240
Target Start/End: Original strand, 44308049 - 44308252
Alignment:
| Q |
37 |
aaacctttatcaggaccatatgatgcttaagagccaaacaggaaaatgacgcaagagttcaattttctagcgaactccattgaagggaaatcaagattat |
136 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| | || || | ||||||||||||||| ||||||| |
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| T |
44308049 |
aaaccttgatcaggaccatatgatgcttaagagccaaacaggaaaatgacacaagaattcaatttgcgagtgagcatcattgaagggaaatctagattat |
44308148 |
T |
|
| Q |
137 |
tggatcaccatttccaaagcatcaccatcgctatgatttgctaaaaatatgttaattatcctaaattagaatttccgttactttaaaacaccccaacacc |
236 |
Q |
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|||||| || ||||| |||||||||||| ||| ||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||| |
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| T |
44308149 |
tggatcgccgtttcccaagcatcaccattgctgtgatttgctaaaaatatgttaattaccttaaattagaatttccgttactataaaacaccccaacacc |
44308248 |
T |
|
| Q |
237 |
tatg |
240 |
Q |
| |
|
|||| |
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|
| T |
44308249 |
tatg |
44308252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 129 - 240
Target Start/End: Original strand, 44315191 - 44315304
Alignment:
| Q |
129 |
aagattattggatcaccatttccaaagcatcaccatcgctatgatttgctaaaaatatgttaattatcctaaattagaa--tttccgttactttaaaaca |
226 |
Q |
| |
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|||||||||||||| || | ||| || |||||| |||||| |||||| ||||||||| |||||||| |||||||||||| ||||||||||| ||||| | |
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| T |
44315191 |
aagattattggatcgccgtatcccaaacatcacaatcgctgtgatttactaaaaatacgttaattaccctaaattagaatttttccgttactataaaata |
44315290 |
T |
|
| Q |
227 |
ccccaacacctatg |
240 |
Q |
| |
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|| ||||||||||| |
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|
| T |
44315291 |
cctcaacacctatg |
44315304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 36 - 94
Target Start/End: Original strand, 44315089 - 44315147
Alignment:
| Q |
36 |
aaaacctttatcaggaccatatgatgcttaagagccaaacaggaaaatgacgcaagagt |
94 |
Q |
| |
|
|||||||| || | |||||||||| |||||||||||||||||||||||||| ||||||| |
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|
| T |
44315089 |
aaaaccttaattatgaccatatgaagcttaagagccaaacaggaaaatgacacaagagt |
44315147 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 44300697 - 44300741
Alignment:
| Q |
196 |
cctaaattagaatttccgttactttaaaacaccccaacacctatg |
240 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |||||||||||| |
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| T |
44300697 |
cctaaattagaatttccgttactataaaacactccaacacctatg |
44300741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 240
Target Start/End: Complemental strand, 23715450 - 23715286
Alignment:
| Q |
76 |
aggaaaatgacgcaagagttcaattttctagcgaactccattgaagggaaatcaagattattggatcaccatttccaaagcatcaccatcgctatgattt |
175 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |||||| |
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| T |
23715450 |
aggaaaatgacacaagtgttcaattttccagcgaaccccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgattt |
23715351 |
T |
|
| Q |
176 |
gctaaaaatatgttaattatcctaaattagaatttccgttactttaaaacaccccaacacctatg |
240 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
23715350 |
gctaaaaatatgttaattaccctaaattagaatttcatttactataaaacaccccaacacctatg |
23715286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 76 - 240
Target Start/End: Complemental strand, 23733906 - 23733742
Alignment:
| Q |
76 |
aggaaaatgacgcaagagttcaattttctagcgaactccattgaagggaaatcaagattattggatcaccatttccaaagcatcaccatcgctatgattt |
175 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |||||| |
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| T |
23733906 |
aggaaaatgacacaagtgttcaattttccagcgaaccccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgattt |
23733807 |
T |
|
| Q |
176 |
gctaaaaatatgttaattatcctaaattagaatttccgttactttaaaacaccccaacacctatg |
240 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
23733806 |
gctaaaaatatgttaattaccctaaattagaatttcatttactataaaacaccccaacacctatg |
23733742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 76 - 237
Target Start/End: Complemental strand, 23696995 - 23696834
Alignment:
| Q |
76 |
aggaaaatgacgcaagagttcaattttctagcgaactccattgaagggaaatcaagattattggatcaccatttccaaagcatcaccatcgctatgattt |
175 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| |||||| |||||| |
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|
| T |
23696995 |
aggaaaatgacacaagtgttcaattttccagcgaaccccattgaagggaaatctagattattggatcaccatttcccaagcatcacaatcgctgtgattt |
23696896 |
T |
|
| Q |
176 |
gctaaaaatatgttaattatcctaaattagaatttccgttactttaaaacaccccaacacct |
237 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| |
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|
| T |
23696895 |
gctaaaaatatgttaattaccctaaattagaatttcatttactataaaacaccccaacacct |
23696834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 76 - 240
Target Start/End: Complemental strand, 23752364 - 23752201
Alignment:
| Q |
76 |
aggaaaatgacgcaagagttcaattttctagcgaactccattgaagggaaatcaagattattggatcaccatttccaaagcatcaccatcgctatgattt |
175 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||| |||| |||||||| | |||||||||||||||||||||| ||||||||| |||||| |||||| |
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| T |
23752364 |
aggaaaatgacacaagtgttcaattttccagcgaaccccatgtaagggaaa-ctagattattggatcaccatttcccaagcatcacaatcgctgtgattt |
23752266 |
T |
|
| Q |
176 |
gctaaaaatatgttaattatcctaaattagaatttccgttactttaaaacaccccaacacctatg |
240 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
23752265 |
gctaaaaatatgttaattaccctaaattagaatttcctttactataaaacaccccaacacctatg |
23752201 |
T |
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