View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19399_low_42 (Length: 239)

Name: NF19399_low_42
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19399_low_42
NF19399_low_42
[»] chr1 (2 HSPs)
chr1 (1-126)||(44193933-44194058)
chr1 (149-182)||(44307874-44307907)
[»] chr7 (2 HSPs)
chr7 (143-187)||(33049111-33049155)
chr7 (144-180)||(31742874-31742910)
[»] chr8 (1 HSPs)
chr8 (146-187)||(14867383-14867424)
[»] chr5 (1 HSPs)
chr5 (143-180)||(14355017-14355054)
[»] chr3 (2 HSPs)
chr3 (144-182)||(46475577-46475615)
chr3 (141-182)||(53527054-53527095)


Alignment Details
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 44194058 - 44193933
Alignment:
Q  1 ttggtagttgccgttaccgtttcccccgattttattatagagtgaaaaaagatcacgaggaaatgccgtcacagccgcaacaaaacaccgttactaccaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  44194058 ttggtagttgccgttaccgtttcccccgattttattatagagtgaaaaaagatcacgaggaaatgctgtcacagccgcaacgaaacaccgttactaccaa 44193959  T
Q  101 aagaaaagaaaacgttgttcatgaca 126  Q
    ||||||||||||||||||||||||||    
T  44193958 aagaaaagaaaacgttgttcatgaca 44193933  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 182
Target Start/End: Complemental strand, 44307907 - 44307874
Alignment:
Q  149 tttaattgagatggatgaaaatcacatttttagt 182  Q
    |||||||| |||||||||||||||||||||||||    
T  44307907 tttaattgggatggatgaaaatcacatttttagt 44307874  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 187
Target Start/End: Original strand, 33049111 - 33049155
Alignment:
Q  143 ttattttttaattgagatggatgaaaatcacatttttagtgcata 187  Q
    |||||||| ||||||||||||||||||||||||||||||| ||||    
T  33049111 ttatttttcaattgagatggatgaaaatcacatttttagtacata 33049155  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 31742874 - 31742910
Alignment:
Q  144 tattttttaattgagatggatgaaaatcacattttta 180  Q
    ||||||| |||||||||||||||||||||||||||||    
T  31742874 tatttttcaattgagatggatgaaaatcacattttta 31742910  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 14867424 - 14867383
Alignment:
Q  146 ttttttaattgagatggatgaaaatcacatttttagtgcata 187  Q
    ||||| ||||||||||||||||||||||||||||||| ||||    
T  14867424 tttttcaattgagatggatgaaaatcacatttttagtacata 14867383  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 143 - 180
Target Start/End: Complemental strand, 14355054 - 14355017
Alignment:
Q  143 ttattttttaattgagatggatgaaaatcacattttta 180  Q
    |||||||| |||||||||||||||||||||||||||||    
T  14355054 ttatttttcaattgagatggatgaaaatcacattttta 14355017  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 46475577 - 46475615
Alignment:
Q  144 tattttttaattgagatggatgaaaatcacatttttagt 182  Q
    ||||||| |||||| ||||||||||||||||||||||||    
T  46475577 tatttttcaattgatatggatgaaaatcacatttttagt 46475615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 53527054 - 53527095
Alignment:
Q  141 cgttattttttaattgagatggatgaaaatcacatttttagt 182  Q
    |||||||||| ||||||| ||||||||||| |||||||||||    
T  53527054 cgttatttttcaattgaggtggatgaaaatgacatttttagt 53527095  T

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