View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19399_low_43 (Length: 237)

Name: NF19399_low_43
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19399_low_43
NF19399_low_43
[»] chr5 (5 HSPs)
chr5 (29-222)||(40383328-40383533)
chr5 (123-222)||(40383043-40383144)
chr5 (138-222)||(40366060-40366144)
chr5 (32-66)||(40364357-40364391)
chr5 (24-62)||(40383211-40383249)
[»] chr7 (3 HSPs)
chr7 (143-222)||(15492167-15492247)
chr7 (143-222)||(15433330-15433410)
chr7 (168-222)||(26222557-26222611)
[»] scaffold1694 (1 HSPs)
scaffold1694 (143-222)||(260-340)
[»] chr6 (1 HSPs)
chr6 (152-212)||(5089326-5089387)
[»] chr1 (1 HSPs)
chr1 (143-222)||(27092084-27092164)
[»] chr4 (1 HSPs)
chr4 (155-222)||(11131821-11131888)
[»] chr3 (2 HSPs)
chr3 (150-222)||(47813235-47813307)
chr3 (168-219)||(25031136-25031187)


Alignment Details
Target: chr5 (Bit Score: 66; Significance: 3e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 29 - 222
Target Start/End: Complemental strand, 40383533 - 40383328
Alignment:
Q  29 ttttttattagaataacaaattcaaatagcattaaacag------gttgcaagctgggatcgtccttatcactttcatttgggaaatnnnnnnngttcag 122  Q
    ||||||||| ||||||||||| ||| ||||||||||||       |||||||| ||||||||| | |||||| ||||||||||||||       |||  |    
T  40383533 ttttttatttgaataacaaatccaagtagcattaaacaataaaaagttgcaagttgggatcgtacatatcacattcatttgggaaataaaaaaagttttg 40383434  T
Q  123 acattgcatccctt-----aaaataaattttcaaaaaatgaataagttagttt-ttattttgaaaaatgacgattgaacccataaaattaagaagaatat 216  Q
    |||||||||||| |     ||||||||||||||||||||  |||||||||||| |||| ||||||||||||||||| |||||||||||||| |||| |||    
T  40383433 acattgcatcccatcttataaaataaattttcaaaaaatatataagttagtttattatattgaaaaatgacgattggacccataaaattaacaagattat 40383334  T
Q  217 gagttt 222  Q
    ||||||    
T  40383333 gagttt 40383328  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 123 - 222
Target Start/End: Complemental strand, 40383144 - 40383043
Alignment:
Q  123 acattgcatcccttaaaataaattttcaaaaaatgaataagtta-gtttttattttgaaaaatgacgattgaacccat-aaaattaagaagaatatgagt 220  Q
    |||||||||||| | ||||||||||||||||||| |||||||||  ||||||||||| ||||||  ||||| |||||| ||||||||||||| | |||||    
T  40383144 acattgcatcccatgaaataaattttcaaaaaataaataagttatttttttattttggaaaatggtgattggacccataaaaattaagaagattttgagt 40383045  T
Q  221 tt 222  Q
    ||    
T  40383044 tt 40383043  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 222
Target Start/End: Complemental strand, 40366144 - 40366060
Alignment:
Q  138 aaataaattttcaaaaaatgaataagttagttttt-attttgaaaaatgacgattgaacccataaaattaagaagaatatgagttt 222  Q
    ||||||||||||||||||| ||||| ||||||||| ||| |  |||||||||||||||||||||||||||| |||| ||| |||||    
T  40366144 aaataaattttcaaaaaat-aataaattagttttttattctacaaaatgacgattgaacccataaaattaaaaagattataagttt 40366060  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 32 - 66
Target Start/End: Complemental strand, 40364391 - 40364357
Alignment:
Q  32 tttattagaataacaaattcaaatagcattaaaca 66  Q
    |||||||||||||||||||||||||||||||||||    
T  40364391 tttattagaataacaaattcaaatagcattaaaca 40364357  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Complemental strand, 40383249 - 40383211
Alignment:
Q  24 agttgttttttattagaataacaaattcaaatagcatta 62  Q
    |||||||| ||||||||||||||||| ||||||||||||    
T  40383249 agttgtttattattagaataacaaatccaaatagcatta 40383211  T

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Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 15492247 - 15492167
Alignment:
Q  143 aattttcaaaaaatgaataagttag-tttttattttgaaaaatgacgattgaacccataaaattaagaagaatatgagttt 222  Q
    |||||| ||||||| ||||| |||| ||||||||||| |||||||||| |||||||||||||||||||||| |||||||||    
T  15492247 aatttttaaaaaataaataaattagatttttattttgtaaaatgacgaatgaacccataaaattaagaagattatgagttt 15492167  T

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Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 15433410 - 15433330
Alignment:
Q  143 aattttcaaaaaatgaataagttag-tttttattttgaaaaatgacgattgaacccataaaattaagaagaatatgagttt 222  Q
    |||||| ||||||| ||||| |||| ||||||| ||| |||||||||| |||||||||||||||||||||| |||||||||    
T  15433410 aatttttaaaaaataaataaattagatttttatattgtaaaatgacgaatgaacccataaaattaagaagattatgagttt 15433330  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 168 - 222
Target Start/End: Complemental strand, 26222611 - 26222557
Alignment:
Q  168 tttttattttgaaaaatgacgattgaacccataaaattaagaagaatatgagttt 222  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| ||| |||||    
T  26222611 tttttattttataaaatgacgattgaacccataaaattaagaagattataagttt 26222557  T

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Target: scaffold1694 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1694
Description:

Target: scaffold1694; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 260 - 340
Alignment:
Q  143 aattttcaaaaaatgaataagttag-tttttattttgaaaaatgacgattgaacccataaaattaagaagaatatgagttt 222  Q
    |||||| ||||||| ||||| |||| ||||||| ||| ||||| |||| |||||||||||||||||||||| |||||||||    
T  260 aatttttaaaaaataaataaattagatttttatattgtaaaattacgaatgaacccataaaattaagaagattatgagttt 340  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 212
Target Start/End: Complemental strand, 5089387 - 5089326
Alignment:
Q  152 aaaatgaataagttagt-ttttattttgaaaaatgacgattgaacccataaaattaagaaga 212  Q
    ||||||||||| || || |||||||||| |||||||||||| ||||||||||||||||||||    
T  5089387 aaaatgaataaatttgtattttattttgtaaaatgacgattaaacccataaaattaagaaga 5089326  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 143 - 222
Target Start/End: Complemental strand, 27092164 - 27092084
Alignment:
Q  143 aattttcaaaaaatgaataagtta-gtttttattttgaaaaatgacgattgaacccataaaattaagaagaatatgagttt 222  Q
    |||||||||||||||||||| |||  ||||||||||  ||||||||| |||||| ||||||||| |||||| ||| |||||    
T  27092164 aattttcaaaaaatgaataaattacttttttattttccaaaatgacggttgaactcataaaatttagaagattataagttt 27092084  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 222
Target Start/End: Complemental strand, 11131888 - 11131821
Alignment:
Q  155 atgaataagttagtttttattttgaaaaatgacgattgaacccataaaattaagaagaatatgagttt 222  Q
    |||||||| |||  |||||||||| |||||||| ||||||||||||||| |||||||| ||| |||||    
T  11131888 atgaataaattaaattttattttgtaaaatgacaattgaacccataaaagtaagaagattattagttt 11131821  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 47813235 - 47813307
Alignment:
Q  150 aaaaaatgaataagttag-tttttattttgaaaaatgacgattgaacccataaaattaagaagaatatgagttt 222  Q
    ||||||||||||| |||| ||||||||||| ||| ||||||||||| |||||||| ||||| || |||||||||    
T  47813235 aaaaaatgaataaattagatttttattttgtaaactgacgattgaatccataaaa-taagaggattatgagttt 47813307  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 219
Target Start/End: Original strand, 25031136 - 25031187
Alignment:
Q  168 tttttattttgaaaaatgacgattgaacccataaaattaagaagaatatgag 219  Q
    ||||||||||| |||||||||||| ||| |||||||||||||| | ||||||    
T  25031136 tttttattttgcaaaatgacgatttaactcataaaattaagaatattatgag 25031187  T

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