View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_low_44 (Length: 237)
Name: NF19399_low_44
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_44 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 5188723 - 5188500
Alignment:
| Q |
1 |
ttccttggtttgtttggattgtcctgtgaattttggtaacgtaaactataagctagatttagtttgtttacctttagagcatgtggatgttatctttgaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
5188723 |
ttccttggtttgtttggattgtcctgtgaattttggtaacatatactataagctagatttagtttgtttacctttagagcatgtggatgttatcttcgaa |
5188624 |
T |
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| Q |
101 |
atgaactgattgttgtctttcagtgttaacattaattgtttaaccaaaagtgttacgttttctaaatcggaggaacgagttgaagggaacttcttgactg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5188623 |
atgaactgattgttgtctttcagtgttaacattaattgtttaaccaagagtgttacgttttctaaaccggaggaacgagttgaagggaacttcttgactg |
5188524 |
T |
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| Q |
201 |
tgggtcaggtggaggtgttcttga |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
5188523 |
tgggtcaggtggaggtgttcttga |
5188500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 56 - 171
Target Start/End: Original strand, 20249859 - 20249974
Alignment:
| Q |
56 |
gatttagtttgtttacctttagagcatgtggatgttatctttgaaatgaactgattgttgtctttcagtgttaacattaattgtttaaccaaaagtgtta |
155 |
Q |
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| T |
20249859 |
gatttagtctgtttacttttggaacatgtgaaagttatatttggaatgtcctggttgttgtcttttggtgttaacattaattgtttgaccaagagtgtta |
20249958 |
T |
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| Q |
156 |
cgttttctaaatcgga |
171 |
Q |
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| T |
20249959 |
cgttttctaaaccgga |
20249974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 101 - 167
Target Start/End: Complemental strand, 17327602 - 17327536
Alignment:
| Q |
101 |
atgaactgattgttgtctttcagtgttaacattaattgtttaaccaaaagtgttacgttttctaaat |
167 |
Q |
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| T |
17327602 |
atgaactgcttgttgtctttttgtgtgaataataattgtttaaccaaaagtgttacattttctaaat |
17327536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 147
Target Start/End: Original strand, 175964 - 176000
Alignment:
| Q |
111 |
tgttgtctttcagtgttaacattaattgtttaaccaa |
147 |
Q |
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| T |
175964 |
tgttgtcttttagtgttagcattaattgtttaaccaa |
176000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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