View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19399_low_46 (Length: 207)

Name: NF19399_low_46
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19399_low_46
NF19399_low_46
[»] chr1 (2 HSPs)
chr1 (32-207)||(3353999-3354170)
chr1 (113-171)||(29958274-29958332)
[»] scaffold0031 (1 HSPs)
scaffold0031 (115-157)||(77370-77413)
[»] chr3 (2 HSPs)
chr3 (118-171)||(31749445-31749498)
chr3 (112-157)||(44438021-44438066)
[»] chr8 (1 HSPs)
chr8 (113-157)||(8867114-8867158)
[»] chr7 (2 HSPs)
chr7 (112-155)||(7174210-7174254)
chr7 (113-157)||(25577860-25577904)
[»] chr2 (1 HSPs)
chr2 (113-157)||(15873860-15873904)


Alignment Details
Target: chr1 (Bit Score: 122; Significance: 9e-63; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 32 - 207
Target Start/End: Complemental strand, 3354170 - 3353999
Alignment:
Q  32 attggacaagctcagtgaaaaaacttgtatatatggataaggaacctacaactcggcagaggagaaattactatgttattttagttaaggaaacaaatat 131  Q
    ||||||||||| ||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  3354170 attggacaagcacagtgaaaaaacttgtat----ggataaggaacctacaactcggcagaggagaaattactttgttattttagttaaggaaacaaatat 3354075  T
Q  132 agtatgaatatcttgaaacttgtgtattcgaagtcttaaatgtggnnnnnnntgttttcaatataaatgtttcttt 207  Q
    ||||||||||||||||||||||||||||||||||||||||| ||        ||||||||||||||||||||||||    
T  3354074 agtatgaatatcttgaaacttgtgtattcgaagtcttaaatatgtaaaaaaatgttttcaatataaatgtttcttt 3353999  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 29958332 - 29958274
Alignment:
Q  113 tagttaaggaaacaaatatagtatgaatatcttgaaacttgtgtattcgaagtcttaaa 171  Q
    |||||||||||||||||||||||  || |||||||||||| |||| || || |||||||    
T  29958332 tagttaaggaaacaaatatagtaaaaacatcttgaaacttctgtagtcaaactcttaaa 29958274  T

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Target: scaffold0031 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 157
Target Start/End: Original strand, 77370 - 77413
Alignment:
Q  115 gttaaggaaa-caaatatagtatgaatatcttgaaacttgtgta 157  Q
    |||||||||| |||||||||||||| ||||||||||||||||||    
T  77370 gttaaggaaatcaaatatagtatgagtatcttgaaacttgtgta 77413  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 31749445 - 31749498
Alignment:
Q  118 aaggaaacaaatatagtatgaatatcttgaaacttgtgtattcgaagtcttaaa 171  Q
    ||||||||| ||||||||  |||||||||||| |||||||||| |||| |||||    
T  31749445 aaggaaacatatatagtaaaaatatcttgaaatttgtgtattcaaagtattaaa 31749498  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 157
Target Start/End: Complemental strand, 44438066 - 44438021
Alignment:
Q  112 ttagttaaggaaacaaatatagtatgaatatcttgaaacttgtgta 157  Q
    |||||||||||||||| ||||||| |||| ||||| ||||||||||    
T  44438066 ttagttaaggaaacaagtatagtaagaatttcttggaacttgtgta 44438021  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Original strand, 8867114 - 8867158
Alignment:
Q  113 tagttaaggaaacaaatatagtatgaatatcttgaaacttgtgta 157  Q
    |||||||||||||||||||||||  ||| |||||||| |||||||    
T  8867114 tagttaaggaaacaaatatagtagaaatttcttgaaagttgtgta 8867158  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 7174254 - 7174210
Alignment:
Q  112 ttagttaaggaaac-aaatatagtatgaatatcttgaaacttgtg 155  Q
    ||||||| |||||| ||||||||||||||||||||| ||||||||    
T  7174254 ttagttatggaaaccaaatatagtatgaatatcttggaacttgtg 7174210  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 25577904 - 25577860
Alignment:
Q  113 tagttaaggaaacaaatatagtatgaatatcttgaaacttgtgta 157  Q
    ||||||||||||||| ||||||| |||| ||||| ||||||||||    
T  25577904 tagttaaggaaacaagtatagtaagaatttcttggaacttgtgta 25577860  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 113 - 157
Target Start/End: Complemental strand, 15873904 - 15873860
Alignment:
Q  113 tagttaaggaaacaaatatagtatgaatatcttgaaacttgtgta 157  Q
    ||||||| |||||||||||| || |||| ||||||||||||||||    
T  15873904 tagttaaagaaacaaatataataagaatttcttgaaacttgtgta 15873860  T

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