View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_low_8 (Length: 533)
Name: NF19399_low_8
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 16 - 516
Target Start/End: Complemental strand, 9073285 - 9072794
Alignment:
| Q |
16 |
atcagagtgaaaaaattgccttgaagaagctcagaaccctaattgatttgctccaacaagattggtgaaagaatgaatggatgctcttgaaactttatag |
115 |
Q |
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| T |
9073285 |
atcagagtgaaagaattaccttgaagaagctcagaaccctaattgatttgctccaacaagattggtgaaagaatgaatggatgctcttgaaactttatag |
9073186 |
T |
|
| Q |
116 |
ggcgaaggtgttatacccttcatttaaaaatgttaatgcatacaattatatattaacagtattctattctatataaaatcttgattcttccaaattgtaa |
215 |
Q |
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| T |
9073185 |
ggcgaaggtgttatacccttcatttaaaaatgttaatgcatacaattat----taacagtattctattctatataaaatcttgattcttcaaaattgtaa |
9073090 |
T |
|
| Q |
216 |
ccgatccaacaaatctttttagttacatgcatggtgcatacgacgttcaatgatgctccaaacattcactttcctccaaaacctcataaataatcttagc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
9073089 |
ccgatccaacaaatctttttagttacatgcatggtgcatacgacgttcaatgatgctccaaacattcactttcctccaaaacctcataaataat-ttagc |
9072991 |
T |
|
| Q |
316 |
aaaagacaccaaaacctcattcttcttcaattcccattttccactaattaattatcactaattgtcattgtttccattacacaattccccaaactccatc |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
9072990 |
aaaagacaccaaaacctcattcttcttcaattcccattttccactaattaattatcactaattgtcattgtttccattactcaattccccaaactccatc |
9072891 |
T |
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| Q |
416 |
ctcattatttctgaatatttctcattgtgactattcttcttctttttgtagaagtattgatgaatnnnnnnnnnntgcaatgcatggtttttgttttgct |
515 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
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| T |
9072890 |
ctcattatttctgaatatttctcattgtgactattcttcttctttttgtagaagtattgatcaat----aaaaaatgcaatgcatggtttttgttttgct |
9072795 |
T |
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