View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19399_low_9 (Length: 508)
Name: NF19399_low_9
Description: NF19399
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19399_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 10 - 491
Target Start/End: Complemental strand, 10280615 - 10280133
Alignment:
| Q |
10 |
catcatcatatatatcataaattcaagatagattttttcttccaaaccaagtttcttt-tgcacaaaagtcaatattcaatcaaatcacttgagttcttt |
108 |
Q |
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|||||||||| || | |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
10280615 |
catcatcatacatgttataaatacaagatagattttttcttccaaaccaagtttctttatgcacaaaagtcaatattcaatcaaatcacttgagttcttt |
10280516 |
T |
|
| Q |
109 |
acctatcacaccaaccagatgttggtctagtaacttgagtttaattcattactattcaaaatgtgaaaattctaatatatgttggaaactttcatcaatc |
208 |
Q |
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| T |
10280515 |
acctatcacaccaaccagatgttggtccagtaacttgagtttaattcattactattcaaaatgtgaaaattctaatatatgttggaaactttcatcaatc |
10280416 |
T |
|
| Q |
209 |
attaaatagaaatttcagttcaattcaactacataactggctgaatattctaatcaataatctcagcacacatcacatcacacaacattagagtacataa |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10280415 |
attaaatagaaatttcagttcaattcaactacataactggccgaatattctaatcaataatctcagcacacatcacatcacacaacattagagtacataa |
10280316 |
T |
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| Q |
309 |
ttattctcaaataaataacataacacacataaaactaaacctaattaatcttacaagacacataaagcacaaacaagacatgaaagttataaactatgct |
408 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10280315 |
ttattctcaaataaataacataacacgcataaaactaaacctaagtaatcttacaagacacataaagcacaaacaagacatgaaagttataaactatgct |
10280216 |
T |
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| Q |
409 |
ttaatcatatgtttgttcattggcaatggaacaggaaaatcatcaatctcatccatccaagcatttttcaatgatttaggatc |
491 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10280215 |
ttaatcatatgtttgttcattggcaatggaacaggaaaatcatcaatctcatccatccaagcatttttcaatgatttaggatc |
10280133 |
T |
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