View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1939_high_2 (Length: 372)
Name: NF1939_high_2
Description: NF1939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1939_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 156; Significance: 8e-83; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 198 - 357
Target Start/End: Complemental strand, 38216064 - 38215905
Alignment:
| Q |
198 |
tctgcatcaattgctaaaaaatgtgacatagaagttgaatgttgtttcaggaccgttttcacgttcggctgtgaactataatgctgggtgcaagactgca |
297 |
Q |
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| T |
38216064 |
tctgcatcaattgctaaaaaatgtgacatagaagttgaatgttgtttcaggaccgttttcgcgttcggctgtgaactataatgctgggtgcaagactgca |
38215965 |
T |
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| Q |
298 |
gcatcaaacattgtaatggcaatagcagtgatgttgacattattattcctaacacctttg |
357 |
Q |
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| T |
38215964 |
gcatcaaacattgtaatggcaatagcagtgatgttgacattattattcctaacacctttg |
38215905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 38216242 - 38216130
Alignment:
| Q |
20 |
ggaagaagctttgcaatgttcaaaaattaccatattgatggcaataaagaaatgatagctattggtaccatgaatatttttggttcattaacctcttgct |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38216242 |
ggaagaagctttgcaatgttcaaaaattaccatattgatggcaataaagaaatgatagctattggtaccatgaatatttttggttcattaacctcttgct |
38216143 |
T |
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| Q |
120 |
acctcacaacagg |
132 |
Q |
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| T |
38216142 |
acctcacaacagg |
38216130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 20 - 132
Target Start/End: Original strand, 31749678 - 31749790
Alignment:
| Q |
20 |
ggaagaagctttgcaatgttcaaaaattaccatattgatggcaataaagaaatgatagctattggtaccatgaatatttttggttcattaacctcttgct |
119 |
Q |
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| T |
31749678 |
ggaagaagctttgcaatgtataaaaattaccatattgatggaaacaaagagatgatagctattggaaccatgaacatagttggttctttcacctcttgct |
31749777 |
T |
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| Q |
120 |
acctcacaacagg |
132 |
Q |
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| T |
31749778 |
acctcacaacagg |
31749790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 242 - 357
Target Start/End: Original strand, 31749874 - 31749989
Alignment:
| Q |
242 |
tttcaggaccgttttcacgttcggctgtgaactataatgctgggtgcaagactgcagcatcaaacattgtaatggcaatagcagtgatgttgacattatt |
341 |
Q |
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||||||| || ||||| || ||||| ||||||||||||||||| |||||||| |||||||| |||||||| ||| |||| ||||| ||||||||| | || |
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| T |
31749874 |
tttcagggccattttcgcgctcggccgtgaactataatgctggatgcaagacagcagcatccaacattgtgatgtcaattgcagtcatgttgacactgtt |
31749973 |
T |
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| Q |
342 |
attcctaacacctttg |
357 |
Q |
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|||| | ||||||||| |
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| T |
31749974 |
attcttgacacctttg |
31749989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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