View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1939_high_3 (Length: 335)
Name: NF1939_high_3
Description: NF1939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1939_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 55063173 - 55063502
Alignment:
| Q |
1 |
tacaactacccacaccctcttaataggatttgtatcacctagagttgttcaaatcgcgcgcattc--acacaatgatca---------------ccgttg |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
55063173 |
tacaactacccacaccctcttaataggatttgtatcacctagagttgttcaaatcgcgcgcattctcacacaatgatcatattgatattgatgaccgttg |
55063272 |
T |
|
| Q |
84 |
gatcgagaataaaagcttgaattctatacgtaaatgtaagattatgagatatcatggaatccaaattcctcccaacatgagaaacaccagtattggg--- |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
55063273 |
gatcgagaataaaagcttgaattctatacgtaaatgtaagattatgagatatcatggaatccaaattcctcctaacatgagaaacaccagtattgggtgg |
55063372 |
T |
|
| Q |
181 |
-aatctcgctttgtagatgaaactgaccgctgactttgtatccgaattctcaagttttctttgaggtttaaattgaaaacttgaaaggagctgtcccttt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55063373 |
gaatctcgctttgtagatgaaactgaccgctgactttgtatccgaattctcaagttttctttgaggtttaaattgaaaacttgaaaggagctgtcccttt |
55063472 |
T |
|
| Q |
280 |
tgattggattggattctttgaacattattc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
55063473 |
tgattggattggattctttgaacattattc |
55063502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University