View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1939_high_6 (Length: 233)

Name: NF1939_high_6
Description: NF1939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1939_high_6
NF1939_high_6
[»] chr4 (4 HSPs)
chr4 (2-225)||(23062259-23062482)
chr4 (8-225)||(32880670-32880874)
chr4 (66-151)||(43992238-43992323)
chr4 (54-148)||(19318834-19318928)
[»] chr2 (1 HSPs)
chr2 (1-225)||(28592866-28593089)
[»] chr6 (2 HSPs)
chr6 (8-225)||(25907261-25907478)
chr6 (72-175)||(21695849-21695952)
[»] chr8 (2 HSPs)
chr8 (1-225)||(21279261-21279485)
chr8 (70-179)||(28164880-28164989)
[»] chr5 (3 HSPs)
chr5 (138-225)||(30302015-30302101)
chr5 (108-154)||(14779531-14779577)
chr5 (72-148)||(20584724-20584800)
[»] chr7 (4 HSPs)
chr7 (54-204)||(9817132-9817282)
chr7 (54-204)||(10719057-10719207)
chr7 (135-181)||(20483935-20483981)
chr7 (66-154)||(21115432-21115520)
[»] chr1 (2 HSPs)
chr1 (54-204)||(15229641-15229790)
chr1 (57-186)||(10505307-10505436)
[»] scaffold0985 (1 HSPs)
scaffold0985 (70-172)||(438-540)
[»] scaffold0114 (1 HSPs)
scaffold0114 (70-179)||(26706-26815)
[»] chr3 (1 HSPs)
chr3 (72-178)||(34932178-34932284)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 23062482 - 23062259
Alignment:
2 gagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagca 101  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062482 gagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagca 23062383  T
102 aagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatg 201  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
23062382 aagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatg 23062283  T
202 atgaaggggtacgaattgatgatg 225  Q
    |||||||||||||||||| |||||    
23062282 atgaaggggtacgaattgctgatg 23062259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 8 - 225
Target Start/End: Original strand, 32880670 - 32880874
Alignment:
8 aggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagaca 107  Q
    ||||||||||||| |||||||||||||||||||||||||||             ||||||||||||||||||||||||| || |||||||||||||||||    
32880670 aggggctgcggcttatcctagtttgttgacaaacttgcgca-------------tttgatgattcaagaggataagtatgggtgacagcgagcaaagaca 32880756  T
108 cactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaag 207  Q
    |||||||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||    
32880757 cactggtatcatgatggtgacttgaataccaaatattttcatgcttcaaccacgtcaagaaagaaggtaaaccgcattaatgttttggataataatgaag 32880856  T
208 gggtacgaattgatgatg 225  Q
    |||||||||||| |||||    
32880857 gggtacgaattgctgatg 32880874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 66 - 151
Target Start/End: Complemental strand, 43992323 - 43992238
Alignment:
66 atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgc 151  Q
    |||||||||||||||||||||||| ||||  ||||||| || || ||||||||||||||||| || ||||| || |||||||||||    
43992323 atgattcaagaggataagtattggagacaaagagcaaaaactcattggtatcgtgatggtgatttaaatacaaatttttttcatgc 43992238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 54 - 148
Target Start/End: Complemental strand, 19318928 - 19318834
Alignment:
54 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca 148  Q
    ||||| || |||||||| ||||||||||| ||||||||||| || ||||| |  |||||||| |||||||||||  | || || |||||||||||    
19318928 atgactcagttgatgatacaagaggataaatattggcgacaacgtgcaaaaattcactggtaccgtgatggtgatctaaacacgaaattttttca 19318834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 28593089 - 28592866
Alignment:
1 ggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||    
28593089 ggagtcaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgat-attcaagaggataagtattggcgacaacgagc 28592991  T
101 aaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
28592990 aaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaagataaaccgcattaattttttggataat 28592891  T
201 gatgaaggggtacgaattgatgatg 225  Q
    ||||||||||||||||||| |||||    
28592890 gatgaaggggtacgaattgctgatg 28592866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 225
Target Start/End: Complemental strand, 25907478 - 25907261
Alignment:
8 aggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagaca 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
25907478 aggggttgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagaca 25907379  T
108 cactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaag 207  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
25907378 cacttgtatcgtgatggtgacttgaataccaaatttcttcatgcttcagccatgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaag 25907279  T
208 gggtacgaattgatgatg 225  Q
    |||||||||||| |||||    
25907278 gggtacgaattgctgatg 25907261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 72 - 175
Target Start/End: Original strand, 21695849 - 21695952
Alignment:
72 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga 171  Q
    |||||||||| ||| ||| ||||  |||| || || ||||||||||||||||| || |||||||| | ||| ||||||||  |||| || ||||||||||    
21695849 caagaggatatgtactggtgacaaagagccaaaactcactggtatcgtgatggagatttgaatacgagattctttcatgcggcagcaacttcaagaaaga 21695948  T
172 aggt 175  Q
    ||||    
21695949 aggt 21695952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 21279485 - 21279261
Alignment:
1 ggagtaaaggggctgcggctgatcctagtttgttgacaaacttgcgcaaacgcatgacacatttgatgattcaagaggataagtattggcgacagcgagc 100  Q
    ||||| |||||||||||| |||||||||||| |||||||||||||| ||||||||||| || |||||||||||||| ||||| |||||||| || |||||    
21279485 ggagtcaaggggctgcggttgatcctagttttttgacaaacttgcggaaacgcatgacgcaattgatgattcaagaagataactattggcggcaacgagc 21279386  T
101 aaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataat 200  Q
     |||||||| |||||||||||||||||| ||||||| |||   |||||||| |||||||| ||||||||||||||||||| |||||||||| ||||||||    
21279385 taagacacattggtatcgtgatggtgacgtgaatacaaaaaaatttcatgcatcagccacatcaagaaagaaggtaaaccacattaattttctggataat 21279286  T
201 gatgaaggggtacgaattgatgatg 225  Q
    |||||| |||||||| ||| |||||    
21279285 gatgaacgggtacgagttgctgatg 21279261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 28164989 - 28164880
Alignment:
70 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 169  Q
    |||||||||||| ||||||| ||||| |||| || |||||||||||||||||||| ||| | || |||||| | || |||||||| || || || |||||    
28164989 ttcaagaggatatgtattggagacagagagctaaaacacactggtatcgtgatggagacctaaacaccaaaatcttccatgcttccgcaacctccagaaa 28164890  T
170 gaaggtaaac 179  Q
    ||| ||||||    
28164889 gaaagtaaac 28164880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 30302015 - 30302101
Alignment:
138 aaattttttcatgcttcagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatgaaggggtacgaattgatgatg 225  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
30302015 aaattttttcatgcttcagccacgtcaagaaaga-ggtaaaccgcattaattttttggataatgatgaaggggtacgaattgctgatg 30302101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 154
Target Start/End: Original strand, 14779531 - 14779577
Alignment:
108 cactggtatcgtgatggtgacttgaataccaaattttttcatgcttc 154  Q
    ||||||||||||||||| |||||||| ||||| |||||| |||||||    
14779531 cactggtatcgtgatggggacttgaacaccaattttttttatgcttc 14779577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 148
Target Start/End: Original strand, 20584724 - 20584800
Alignment:
72 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttca 148  Q
    |||||||||| ||||||||||||  |||| || || ||||||||||| |||||  ||||||| || ||||| |||||    
20584724 caagaggatatgtattggcgacaaagagccaaaactcactggtatcgcgatggatacttgaacacgaaattctttca 20584800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 9817282 - 9817132
Alignment:
54 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 153  Q
    |||||||| ||||||||| || |||| ||||||||  | || ||||| ||||| ||||||||||||||||||||| | || || |||  ||||||||||     
9817282 atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg 9817183  T
154 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 204  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |||||||    
9817182 cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatg 9817132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 10719207 - 10719057
Alignment:
54 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 153  Q
    |||||||| ||||||||| || |||| ||||||||  | || ||||| ||||| ||||||||||||||||||||| | || || |||  ||||||||||     
10719207 atgacacacttgatgattaaataggacaagtattgatggcatcgagctaagactcactggtatcgtgatggtgaccttaacactaaaaattttcatgctg 10719108  T
154 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 204  Q
    |||||||||| ||||| ||||||||||| |||||||||||||| |||||||    
10719107 cagccacgtctagaaaaaaggtaaaccgtattaattttttggaaaatgatg 10719057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 181
Target Start/End: Original strand, 20483935 - 20483981
Alignment:
135 accaaattttttcatgcttcagccacgtcaagaaagaaggtaaaccg 181  Q
    |||||||||||||||||||| |||||||  ||||| |||||||||||    
20483935 accaaattttttcatgcttctgccacgtttagaaaaaaggtaaaccg 20483981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 21115432 - 21115520
Alignment:
66 atgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttc 154  Q
    ||||| ||||| ||||| |||||||| ||||| || || || || |||||||||||||||||  | || || || ||||||||||||||    
21115432 atgatacaagaagataaatattggcgtcagcgtgcgaaaactcattggtatcgtgatggtgatctaaacacgaagttttttcatgcttc 21115520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 54 - 204
Target Start/End: Original strand, 15229641 - 15229790
Alignment:
54 atgacacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgctt 153  Q
    ||||| || ||||| ||||||||||||||||||||||| ||||| || ||||| || ||||| ||| |||||||| | ||||| |||    || ||||||    
15229641 atgacgcacttgattattcaagaggataagtattggcggcagcgtgctaagactcattggtaccgt-atggtgaccttaatactaaaaaaattgatgctt 15229739  T
154 cagccacgtcaagaaagaaggtaaaccgcattaattttttggataatgatg 204  Q
    ||||||| ||  |||| ||||||||||| |||||||||||||| |||||||    
15229740 cagccacatcttgaaaaaaggtaaaccgtattaattttttggaaaatgatg 15229790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 57 - 186
Target Start/End: Complemental strand, 10505436 - 10505307
Alignment:
57 acacatttgatgattcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcag 156  Q
    |||||| ||||||||||||| ||||| |||||| | || ||||| ||||  || |||||||||| ||| ||  ||||||| |||||||||||||| ||      
10505436 acacatctgatgattcaagaagataaatattggaggcaacgagccaagatccattggtatcgtgttggcgatatgaatactaaattttttcatgcctcta 10505337  T
157 ccacgtcaagaaagaaggtaaaccgcatta 186  Q
    |||| || | |||||||||||||| |||||    
10505336 ccacatctaaaaagaaggtaaaccacatta 10505307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0985 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0985
Description:

Target: scaffold0985; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 70 - 172
Target Start/End: Complemental strand, 540 - 438
Alignment:
70 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 169  Q
    ||||||| || | ||||||| | ||| |||| |||||||||||||| |||||||| ||| | ||||||||||| ||||||||||| || || || |||||    
540 ttcaagaagacatgtattggaggcagagagctaagacacactggtaccgtgatggagaccttaataccaaattctttcatgcttccgcaacctccagaaa 441  T
170 gaa 172  Q
    |||    
440 gaa 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0114 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 70 - 179
Target Start/End: Complemental strand, 26815 - 26706
Alignment:
70 ttcaagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaa 169  Q
    ||||||| |||| ||||||| | ||| |||| || |||||||||||||||||||| ||| | ||||||||||| || || ||||| || || ||  ||||    
26815 ttcaagaagatatgtattggaggcagagagctaaaacacactggtatcgtgatggagacctaaataccaaattcttccacgcttccgcaacctcctgaaa 26716  T
170 gaaggtaaac 179  Q
    ||| ||||||    
26715 gaaagtaaac 26706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 34932178 - 34932284
Alignment:
72 caagaggataagtattggcgacagcgagcaaagacacactggtatcgtgatggtgacttgaataccaaattttttcatgcttcagccacgtcaagaaaga 171  Q
    |||||||||| ||||||| ||||| |||| || || |||| |||||||||||| ||| |||| || ||||| || ||||| || || || || |||||||    
34932178 caagaggatatgtattggagacagagagctaaaacgcacttgtatcgtgatggagacctgaacacaaaattcttccatgcgtccgcaacctccagaaaga 34932277  T
172 aggtaaa 178  Q
    | |||||    
34932278 aagtaaa 34932284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University