View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1939_low_1 (Length: 463)
Name: NF1939_low_1
Description: NF1939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1939_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 430; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 2820611 - 2820174
Alignment:
| Q |
13 |
acagagaaccttatgcttattggaaaggaaatccgtatactgccgcaacacgactagacttcctcaattgtaatgtttcaaccgcacaggattggaatct |
112 |
Q |
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| T |
2820611 |
acagagaaccttatgcttattggaaaggaaatccgtatactgccgcaacacgactagacttcctcaattgtaatgtttcaaccgcacaggattggaatct |
2820512 |
T |
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| Q |
113 |
tcgtttatttacgcaggtacagacatatctaaaggctttctgataagttataacacatatcagtatacaaaatgatgatattttgtcacaaatatgtagg |
212 |
Q |
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| T |
2820511 |
tcgtttatttacgcaggtacagacatatctaaaggctttctgataagttataacacatatcagtatacaaaatgatgatattttgtcacaaatatgtagg |
2820412 |
T |
|
| Q |
213 |
attggattaaagagtctgaacaaggattcaatcactcaaacttggcagaccaatgtacatataggtagttccatttaatctcagatcacatatgttttat |
312 |
Q |
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| T |
2820411 |
attggattaaagagtctgaacaaggattcaatcactcaaacttggcagaccaatgtacatataggtagttccatttaatctcagatcacatatgttttat |
2820312 |
T |
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| Q |
313 |
tttttatcccaaaattcatcatgtacatttaaattaatataatatgtatatatatgtatttgattttccttgatatcagatacaaagtttatattgaagg |
412 |
Q |
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| T |
2820311 |
tttttatcccaaaattcatcatctacatttaaattaatataatatgtatatgtatgtatttgattttccttgatatcagatacaaagtttatattgaagg |
2820212 |
T |
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| Q |
413 |
atacgcgtggtctgtgagtgagaaatacattctagcct |
450 |
Q |
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| T |
2820211 |
atacgcgtggtctgtgagtgagaaatacattctagcct |
2820174 |
T |
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