View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1939_low_5 (Length: 238)
Name: NF1939_low_5
Description: NF1939
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1939_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 39108241 - 39108461
Alignment:
| Q |
1 |
taaaataactctacaaatatctagttattattttacaaaaatatttacttaatatgatttaattgaatgcatgaatnnnnnnnn-ttaaaccgtcatttg |
99 |
Q |
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| T |
39108241 |
taaaataactctacaaatatctagttattattttacaaaaatatttacttaatataatttaattgaatgcatgaataaaaaaaaattaaaccgtcatttg |
39108340 |
T |
|
| Q |
100 |
acaccagagcttttatggtgggacatgcaaccctcaaagtcgcctcaagaaagtggccaaagatgatgttgacagaaacataaagttcaaagggtcattc |
199 |
Q |
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| T |
39108341 |
acaccggagcttttatggtgggacctgcaaccctcaaagtcgcctcaaaaaagtggccaaagatgatgttgacagaaacataaagttcaaagagtcattc |
39108440 |
T |
|
| Q |
200 |
ataacaatattatgtctcata |
220 |
Q |
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|||| |||||||||||||||| |
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| T |
39108441 |
ataataatattatgtctcata |
39108461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 159
Target Start/End: Original strand, 7760804 - 7760855
Alignment:
| Q |
109 |
cttttatggtgggacatgcaaccctcaaagtcgcctcaag-aaagtggccaa |
159 |
Q |
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| T |
7760804 |
cttttatggtgggacaagcaaccctcaaagtcgcgtcaagtaaagtggccaa |
7760855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 216
Target Start/End: Original strand, 44684961 - 44685000
Alignment:
| Q |
177 |
acataaagttcaaagggtcattcataacaatattatgtct |
216 |
Q |
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| T |
44684961 |
acatagagttcaaagggtcatgcataacaatattatgtct |
44685000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 110 - 139
Target Start/End: Complemental strand, 23773440 - 23773411
Alignment:
| Q |
110 |
ttttatggtgggacatgcaaccctcaaagt |
139 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
23773440 |
ttttatggtgggacatgcaaccctcaaagt |
23773411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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