View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19400_high_13 (Length: 368)

Name: NF19400_high_13
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19400_high_13
NF19400_high_13
[»] chr1 (3 HSPs)
chr1 (2-282)||(33066221-33066502)
chr1 (1-279)||(21493169-21493448)
chr1 (304-361)||(33066176-33066233)
[»] chr3 (6 HSPs)
chr3 (2-224)||(10288597-10288820)
chr3 (1-224)||(10304313-10304534)
chr3 (9-282)||(20950720-20950994)
chr3 (314-348)||(10288565-10288599)
chr3 (314-348)||(10304281-10304315)
chr3 (303-343)||(20950981-20951021)
[»] chr8 (3 HSPs)
chr8 (1-190)||(28975464-28975653)
chr8 (9-282)||(29041528-29041802)
chr8 (303-350)||(29041789-29041836)
[»] chr4 (4 HSPs)
chr4 (4-279)||(9283049-9283322)
chr4 (9-282)||(38501250-38501524)
chr4 (303-350)||(38501216-38501263)
chr4 (303-349)||(9283312-9283358)
[»] chr7 (1 HSPs)
chr7 (9-282)||(20380739-20381013)
[»] scaffold0111 (1 HSPs)
scaffold0111 (15-279)||(46609-46874)
[»] scaffold0041 (1 HSPs)
scaffold0041 (9-282)||(4782-5051)
[»] chr5 (1 HSPs)
chr5 (195-267)||(27504709-27504781)
[»] chr6 (1 HSPs)
chr6 (1-227)||(13581739-13581966)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 2 - 282
Target Start/End: Complemental strand, 33066502 - 33066221
Alignment:
Q  2 tgcaccctggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaac 101  Q
    |||||| ||| |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  33066502 tgcaccttggtcgttgctatctttaggtaggggcttttatgaattcttttttgccactgaatctgatttgcaaattgtttgggcaatgggaaccgtgaac 33066403  T
Q  102 ttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggcac 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||| ||||| || |||||||| | || |||||||||||||    
T  33066402 ttgaagccgggggtgttacgtttatttgaatggtcagtggattttgatatgcataatcatagagatacacatacgcaagtacggattcgattgatggcac 33066303  T
Q  201 tgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagttcttgacaatgcaac 282  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||    
T  33066302 tgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcacgccgctcgttgttgacaatgcaac 33066221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 21493448 - 21493169
Alignment:
Q  1 ctgcaccctggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaa 100  Q
    ||||||| ||| | ||||| ||| |||||| |||||| ||||||||| |||||| || |||||||||| |||||| ||||||||||||||||||| | ||    
T  21493448 ctgcaccttggtctttgctttctctaggtaggggcttctatgaattcgtttttgccaatgaatctgatatgcaaaatgtttgggcaatgggaactttaaa 21493349  T
Q  101 cttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggca 199  Q
    ||||||||| | ||| |||||  ||||||||||| | ||||| ||||| |||||||| |||||||| ||| ||||| ||||||| |||||| | ||||||    
T  21493348 cttgaagccaggggttttacgactatttgaatggactgtggactttgatatgcataaccagagaaacacacatgcgtaagtatggatccgacttatggca 21493249  T
Q  200 ctgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagttcttgacaatgc 279  Q
    ||||||||||||||||||||||| |  ||  | || || |||||||||| |||||||| ||||| ||| |||||||||||    
T  21493248 ctgccacaagaatattggatggagcagaccttgcgagagattgctagtgcggttggcacgccgcaagtccttgacaatgc 21493169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 304 - 361
Target Start/End: Complemental strand, 33066233 - 33066176
Alignment:
Q  304 ttgacaatgcaaccttgaaaagactttttggacattatgcacgtatattcttcgacat 361  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||  |||||||    
T  33066233 ttgacaatgcaaccttgtaaagactttttggacactatgcacgtatattagtcgacat 33066176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 10288820 - 10288597
Alignment:
Q  2 tgcaccctggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaac 101  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10288820 tgcaccttggacgttgctatctttaggtaggggcttttatgaattcttttttgccactgaatctgatttgcaaattgtttgggcaatgggaactgtgaac 10288721  T
Q  102 ttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggcac 200  Q
    |||||||||| | ||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  10288720 ttgaagccggggatgttacgattatttgaatggtcagtggatattgatatgcataatcagagaaatacacatgcgcaagtatggatccgattgatggcac 10288621  T
Q  201 tgccacaagaatattggatggaac 224  Q
    ||||||||||||||||||||||||    
T  10288620 tgccacaagaatattggatggaac 10288597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10304534 - 10304313
Alignment:
Q  1 ctgcaccctggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaa 100  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||||||||||| || |||||   ||||||||||||||||||||||||||||||||||    
T  10304534 ctgcaccttggacgttgctatctttaggtaggggcttttatgaattcttttttgccattgaat---atttgcaaattgtttgggcaatgggaactgtgaa 10304438  T
Q  101 cttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggca 199  Q
    ||||||||||  ||||||||| ||||||||||||||| | |||||||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||    
T  10304437 cttgaagccgagggtgttacgattatttgaatggtcaatagattttgatatgcataatcagagaaatacacatgcgcaagtatggatccgattcatggca 10304338  T
Q  200 ctgccacaagaatattggatggaac 224  Q
    |||||||||||||||||||||||||    
T  10304337 ctgccacaagaatattggatggaac 10304313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 20950720 - 20950994
Alignment:
Q  9 tggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaacttgaagc 108  Q
    |||||||| |||||| |||| | ||| | |||| ||||||||||||  | |||||||||| |||||| |||||||||| |||||||  |  | |||||      
T  20950720 tggacgttactatctctaggcaggggttattataaattcttttttgctaatgaatctgatatgcaaactgtttgggcagtgggaacgatagatttgaaat 20950819  T
Q  109 cggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggcactgccaca 207  Q
    ||| ||| ||||| ||||||||| ||   || |||||||| ||| |||||||||| || ||  ||| ||||||||| |||||||||||||||||||||||    
T  20950820 cgggggttttacgcttatttgaacggagtgtcgattttgatatgtataatcagaggaacacccatgtgcaagtatggatccgattgatggcactgccaca 20950919  T
Q  208 agaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagttcttgacaatgcaac 282  Q
    ||||||||||||||| |  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  20950920 agaatattggatggagcagactctacgtgaaattgctagtgtggttggcacgccgctagttcttgacaatgcaac 20950994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 10288599 - 10288565
Alignment:
Q  314 aaccttgaaaagactttttggacattatgcacgta 348  Q
    |||||||||||||||||||||||| ||||||||||    
T  10288599 aaccttgaaaagactttttggacactatgcacgta 10288565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 348
Target Start/End: Complemental strand, 10304315 - 10304281
Alignment:
Q  314 aaccttgaaaagactttttggacattatgcacgta 348  Q
    |||||||||||||||||||||||| ||||||||||    
T  10304315 aaccttgaaaagactttttggacactatgcacgta 10304281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 303 - 343
Target Start/End: Original strand, 20950981 - 20951021
Alignment:
Q  303 cttgacaatgcaaccttgaaaagactttttggacattatgc 343  Q
    ||||||||||||||  ||||||||||||||||||| |||||    
T  20950981 cttgacaatgcaacactgaaaagactttttggacactatgc 20951021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 178; Significance: 6e-96; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 28975653 - 28975464
Alignment:
Q  1 ctgcaccctggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaa 100  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28975653 ctgcaccttggaggttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaa 28975554  T
Q  101 cttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaatacaatgcgcaagtatgcatccga 190  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28975553 cttgaagccggcggtgttacgtttatttgaatggtcagtggattttgatatgcataatcagagaaatacaatgcgcaagtatgcatccga 28975464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 29041528 - 29041802
Alignment:
Q  9 tggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaacttgaagc 108  Q
    |||||||| || ||| |||||| ||| | ||| ||||||||||||| || |||||||||| |||||| |||||||||| |||||||  | || ||||| |    
T  29041528 tggacgttactgtctctaggtaggggttattaggaattcttttttgccaatgaatctgatatgcaaactgtttgggcagtgggaacgataaatttgaaac 29041627  T
Q  109 cggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggcactgccaca 207  Q
    ||| ||| ||||| |||||||||||| | || |||||||| ||| |||| || || || ||  ||| ||||||||| |||||||||||||||||||||||    
T  29041628 cgggggttttacgcttatttgaatggactgtcgattttgatatgtataaacaaaggaacactcatgtgcaagtatggatccgattgatggcactgccaca 29041727  T
Q  208 agaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagttcttgacaatgcaac 282  Q
    |||||||  |||||| |  |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  29041728 agaatatcagatggagcagactctacgtgaaattgctagtgcggttggcacgccgctagttcttgacaatgcaac 29041802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 29041789 - 29041836
Alignment:
Q  303 cttgacaatgcaaccttgaaaagactttttggacattatgcacgtata 350  Q
    ||||||||||||||  ||||||||||||||||||| ||||| ||||||    
T  29041789 cttgacaatgcaacactgaaaagactttttggacactatgcccgtata 29041836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 151; Significance: 8e-80; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 4 - 279
Target Start/End: Original strand, 9283049 - 9283322
Alignment:
Q  4 caccctggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaactt 103  Q
    |||| |||||||||||||||||||||| |||||||||||| |||||||||| |||| |   |||||||||||||||||||||||||||||||||||||||    
T  9283049 caccttggacgttgctatctttaggtaggggcttttatgacttcttttttgccactaa---tgatttgcaaattgtttgggcaatgggaactgtgaactt 9283145  T
Q  104 gaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaatac-aatgcgcaagtatgcatccgattgatggcactg 202  Q
    |||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||| || || ||  | || |||||||| ||||||||||||||||||    
T  9283146 gaagccgggggtgttacgtttatttgaatggtcggtggattttaatatgcataatcataggaacactcaagcacaagtatggatccgattgatggcactg 9283245  T
Q  203 ccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagttcttgacaatgc 279  Q
    |||||| ||||||| ||| |||||||||||   |||||||| |||| |||||||| ||| |||||||||||||||||    
T  9283246 ccacaacaatattgaatgaaacgtactctatcggaaattgccagtgcggttggcacgccactagttcttgacaatgc 9283322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 38501524 - 38501250
Alignment:
Q  9 tggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaacttgaagc 108  Q
    |||||||| |||||| |||||| ||| ||||| |||||||||||||  | |||||||||| |||||| |||||||||| |||||||| | || ||||| |    
T  38501524 tggacgttactatctctaggtaggggtttttacgaattcttttttgctaatgaatctgatatgcaaactgtttgggcagtgggaactataaatttgaaac 38501425  T
Q  109 cggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggcactgccaca 207  Q
    ||| ||| ||||| |||||||||||| | || |||||||| ||| |||||||||| || ||  ||||||| ||||| ||||||||||||||| |||||||    
T  38501424 cgggggttttacgcttatttgaatggactgtcgattttgatatgtataatcagaggaacacccatgcgcaggtatggatccgattgatggcattgccaca 38501325  T
Q  208 agaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagttcttgacaatgcaac 282  Q
    ||||||||||||||| |  |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  38501324 agaatattggatggagcagactctacgtgaaattgctagtgcggttggcacgccgctagttcttgacaatgcaac 38501250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 350
Target Start/End: Complemental strand, 38501263 - 38501216
Alignment:
Q  303 cttgacaatgcaaccttgaaaagactttttggacattatgcacgtata 350  Q
    ||||||||||||||  ||||||||||||||||||| ||||| ||||||    
T  38501263 cttgacaatgcaacactgaaaagactttttggacactatgcccgtata 38501216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 303 - 349
Target Start/End: Original strand, 9283312 - 9283358
Alignment:
Q  303 cttgacaatgcaaccttgaaaagactttttggacattatgcacgtat 349  Q
    ||||||||||| || |||||||||||||||||||| |||||| ||||    
T  9283312 cttgacaatgcgacattgaaaagactttttggacactatgcatgtat 9283358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 123; Significance: 4e-63; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 9 - 282
Target Start/End: Original strand, 20380739 - 20381013
Alignment:
Q  9 tggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaacttgaagc 108  Q
    |||||||| |||||| |||||| ||| ||||| |||||||||||||  | |||||||||| |||||| | |||||||| |||||||  | || ||||| |    
T  20380739 tggacgttactatctctaggtaggggtttttacgaattcttttttgctaatgaatctgatatgcaaactatttgggcagtgggaacgataaatttgaaac 20380838  T
Q  109 cggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggcactgccaca 207  Q
    ||| ||| ||||| |||||||||||| | || |||||||| ||| |||||||||| || ||  ||||||| ||||| |||||||||||||||||||||||    
T  20380839 cgggggttttacgcttatttgaatggactgtcgattttgatatgtataatcagaggaacacccatgcgcaggtatggatccgattgatggcactgccaca 20380938  T
Q  208 agaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagttcttgacaatgcaac 282  Q
    ||||||||||||||| |  ||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||    
T  20380939 agaatattggatggagcagactctacgtgaaatttctagtgcggttggcacgccgctagttcttgacaatgcaac 20381013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 15 - 279
Target Start/End: Complemental strand, 46874 - 46609
Alignment:
Q  15 ttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaacttgaagccggcgg 114  Q
    ||||| ||| |||||| |||||| |||||||||||||||| || |||||||||| |||||| ||||||||||||||||||| | ||||||||||||| ||    
T  46874 ttgctttctctaggtaggggcttctatgaattcttttttgccaatgaatctgatatgcaaaatgtttgggcaatgggaactttaaacttgaagccggggg 46775  T
Q  115 tgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggcactgccacaagaata 213  Q
    | |||||  ||||||||||| | | ||||||||| |||||||| |||||||| ||| ||||||||||||| |||||| | ||||||||||||||||||||    
T  46774 ttttacgactatttgaatggactgcggattttgatatgcataaccagagaaacacacatgcgcaagtatggatccgacttatggcactgccacaagaata 46675  T
Q  214 ttggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagttcttgacaatgc 279  Q
    |||||||||    ||  | || || |||||||||| |||||||| ||||| ||| |||||||||||    
T  46674 ttggatggagaagaccttgcgagatattgctagtgcggttggcacgccgcaagtccttgacaatgc 46609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 9 - 282
Target Start/End: Complemental strand, 5051 - 4782
Alignment:
Q  9 tggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaacttgaagc 108  Q
    |||||||| |||||| |||||| ||| | ||| |||||||||||||  | ||||||| || ||||||||||||||||| |||||||  | || ||||| |    
T  5051 tggacgttactatctctaggtaggggttattacgaattcttttttgctaatgaatcttatatgcaaattgtttgggcagtgggaacgataaatttgaaac 4952  T
Q  109 cggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggcactgccaca 207  Q
    ||| ||| ||||| |||||||||||| | ||     |||| ||| |||||||||| || ||  |||| |||||||| |||| ||||||||||||||||||    
T  4951 cgggggttttacgcttatttgaatggactgt-----ttgatatgtataatcagaggaacacccatgcacaagtatggatccaattgatggcactgccaca 4857  T
Q  208 agaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagttcttgacaatgcaac 282  Q
    ||||||||||||||| |  |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||    
T  4856 agaatattggatggagcagactctacgtgaaattgctagtgcggttggcacgccgctagttcttgacaatgcaac 4782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 195 - 267
Target Start/End: Original strand, 27504709 - 27504781
Alignment:
Q  195 tggcactgccacaagaatattggatggaacgtactctacgtgaaattgctagtgtggttggcatgccgctagt 267  Q
    |||||||||| ||||||||||||||||||| ||| || || ||||| || |||| |||||||| |||||||||    
T  27504709 tggcactgccgcaagaatattggatggaacatacacttcgggaaatcgcaagtgcggttggcacgccgctagt 27504781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13581966 - 13581739
Alignment:
Q  1 ctgcaccctggacgttgctatctttaggtaagggcttttatgaattcttttttgtcactgaatctgatttgcaaattgtttgggcaatgggaactgtgaa 100  Q
    ||||||| ||||| |||  |||| |||||| ||| ||||||||||||||||||      ||||||||||| |||   |||||||| ||||||||  | ||    
T  13581966 ctgcaccatggactttgtcatctctaggtaggggtttttatgaattcttttttaatttagaatctgatttacaagcggtttgggcgatgggaacattaaa 13581867  T
Q  101 cttgaagccggcggtgttacgtttatttgaatggtcagtggattttgaaatgcataatcagagaaataca-atgcgcaagtatgcatccgattgatggca 199  Q
     ||||| |||| | | |||||||||||||||||| ||   || ||| | ||||||||||| ||||| ||| |||| ||||| || ||  |||| |||| |    
T  13581866 tttgaaaccggggctattacgtttatttgaatgggcaaaagactttaatatgcataatcatagaaacacacatgctcaagtctggatatgattaatggaa 13581767  T
Q  200 ctgccacaagaatattggatggaacgta 227  Q
     | ||||| |||||||||| ||||||||    
T  13581766 ttaccacaggaatattggaaggaacgta 13581739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University