View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19400_high_15 (Length: 350)
Name: NF19400_high_15
Description: NF19400
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19400_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 23 - 335
Target Start/End: Original strand, 55852348 - 55852660
Alignment:
| Q |
23 |
tgaaatgcgtgagattcaaaaacattcatcaacatcatcgtgagtgnnnnnnnnnncataagaacattgatcaacatcatcgtgattcgtgaggaaaaca |
122 |
Q |
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| T |
55852348 |
tgaaatgcgtgagattcaaaaacattcatcaacatcatcgtgagtgaaaaaaaaaacataagaacattgatcaacatcatcgtgattcgtgagggaaaca |
55852447 |
T |
|
| Q |
123 |
aaaaatcatcaaaatgaagagtaatcaacagtaagatttatcaaaatcagaagtgctcgagattcatgaacatatgaagnnnnnnnntcaaaacaaacca |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
55852448 |
aaaaatcatcaaaatgaagagtaatcaacagtaagatttatcaaaatcagaagtgctcgagattcatgaacatatgaagaaaaaaaatcaaaacaaacca |
55852547 |
T |
|
| Q |
223 |
gagattcatcattatcaacaacaacaataaataataatagaatttaagagagagnnnnnnnnnnnnnnnnnngattatgaactaaagaaagagcctgaaa |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
55852548 |
gagattcatcattatcaacaacaacaataaataataatagaatttaagagagagaaaaaattaaaataaaaagattatgaactaaagaaagagcctgaaa |
55852647 |
T |
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| Q |
323 |
cagcaatagatgg |
335 |
Q |
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||||||||||||| |
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| T |
55852648 |
cagcaatagatgg |
55852660 |
T |
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